Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1992 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGAGTTGCCACTGGCCCCGGAATTTCGCCCTACGGACACCGAATTTGCCGACCCAATTGCTTACATTTCAAAGATTGAGAAGCAAGCTGCCAGCTTCGGGATTTGTAAGATTATCCCACCATTGCCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCGGATTTAGGTCCAGATAACAGTTCGTTAGGTGTTTGTAACTCATTGAAATTCGGTTCTGGGGATGGTAGTAGTGATGGGGTGTCTCGAGCTGTGTTTACTACTAGGCATCAAGAACTAGGGCAGAGTCAGAGTGTGAAAAAAGCCAAAGGAACGGTTCAGAATCCACAGTCAGGTGTTCATAAGCAAGTATGGCAAAGCGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCAAGAAGCTTGCTAGGGTCAGTGAAGGATGTTTCTCCGCTGGTTATAGAGTCTATGTTTTGGAAGGCAACTTTAGAAAAACCAATCTATGTGGAGTATGCCAATGACGTGCCTGGGTCTGCTTTTGAAGAGTCAAAGGGTCAATTTCATTATAGTCATAGAAGGCTAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGTAATGGGTTGCGGAAGAGATACCCAAATTGATGACACTAAGGGTGCTTCTGTCCAAAGTGACGCTGACAAATGTTTACGGATGGCCAAATCAGTTGATACTGTGTCAACATTTTCATCGAATGATGATTCACAATCTTTTAAAGAAAAGAGTTCAGATACTGGCAATGACATGCAAGGGACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACCTGCAAGTTATTGCACGATCGTCTGGCTCATTGACACGTTTTATGCCGGATGATATTCCTGGTGTGACTTCACCTATGGTATACATTGGTATGCTATTCAGTTGGTTTGCTTGGCACGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACCGGCTCATCAAAGACATGGTATGCTGTTCCTGGAGATTATGCGTTTGCTTTTGAGGAAGTCATACGCACTGAGGGTTATGGTGGTAATATTGATCATTTAGCCGCTTTGAAACTTTTGGGTGAAAAAACAACTCTTTTGTCACCCGAGGTAATTGTTGCATCTGGAATTCCTTGTTGCAGGTTGACACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTGGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGTGTAGCCAAGGAGGCTGCAGTGCGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGAGTTCCAAGAACACTATTACCTGGGGTGCGCAGTTCTCGATTGAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTCATAGAAGACATGCTACAGGAAAACAAGCTGCTATCCATTCTTCTTGGAAAGGAAGCTGCTAAAAGAGCTGTTTTATGGAATGCTGAGTTGCTGCCAGATTCCAGCAAAGGTTTTCAGTTGCCTGATTTAACTTCTCCAACTGGAACCTCTGTGGCAAACATGCCAAATATTAGTTCTGCCAAAAAAAGTGGTCATTATCTGCTTGATGATGAGATGAGTTTGTATATGGATTCTTTGACTAATATAGATATTGGTGGTGATGATCTTCCCTATCACTTCGAAACTGATTCCGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGGCTGTGATCCAACCAACTGAGAAATTGACAATGGAACTTCCTGATAATCATCTAATTCAAGTTTCCTCGTCGGACTCTACTGCTGGTCTTCATAGTTCCATATCACGGGATCTATCTTTTTCTGAACTTTCATCAGTAAAGGAGATGCCAGATCAATCATTAAATAAGTGCAGTAAGTGTTGGAACACCTCCAGTAAATTTTTTAGGCCTCGGATTTTCTGCCTGGGGCATGCTGTTCAAATAGTAGATATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGCGAAGTTGCGGTAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACGGCATCCCCAGAAAATTTAACCTTGATAGATCTGGCTGTTGATGGTGAAGAGCTTGATGAATGTGAAGACTGGACATCAACACTTGGCATTAACCTACGAAATTGGGTCCATGCAAGAAATAATGCTCCTTCTAAACAAGTTCCTTGGACACTTGGGACATTGTTCCATGATAAATGTCCTGCTTCAAAAGTTTTAGCTTTAAATTGGCAGTCTCGGAGATTCCGGTCGAAAAGGTCGAGCCATTTAACTCAGACTAATTCCTCTCACAGCATTGAGAGAAAGAAGGATGATCAGTTGGGTGGAAGAATAAATGACTCCACTGCTGACAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCACACGTGTTTCCCTGTAGCAAACATGGTCTGTGAACTCCAAGAGAAGTCCCAAAAGGTGTCTGCTACTTTAAGTGCGGATCATAATAATTGTGTTTCTAAAACTCTTCAAGCTGAGGATTTAAGGACAGAGTGTGCATTGCCATGTTCTTCTGTTTGTAATGAAATGTCTTCAATGCATCCTGAAATCCAAATTGCCGAAATGCCCATTAGCACGAAAATGAGTGCTGCTAAGTCACAACCTTCAAATTCCATTCCTGATCATGTTTTAATGATTGAAAAACTTGGAGCAGAGATTGAGAATCAAACGAAGCAGGAATCATATGTAGACAGAAATAATGATTTAACGGTCAGTCATTCTAAGATGCACCACAATACTGATGTCTCAGAAATATGTGGCAAGGAGAGCCAGGATTGTCAGTACAAGAAATGTTCTAGCACACTGTCAAATGCACCAGATGGAAATATTGAAATGATTAAAATGACTGAAATTGCAGAAGCAGTTATCATTGATAGCCAATGTAATAGGTTAACATTGGATGATCAAGGGCATCAAGAATATCAGTCTAACTACAAAAGCAACAATGAGGAAGCTGCTGTATCAACTGCTTCAATGGTAAATCAATCTACACTTGCTTCTGTGGATGGAAACGTTGAAAGTCCAAATAATAATCATATCTCAGAAAGAATTAGTAGTCCTATTTTCCTAGAAAATGCAAATGATGAAGGAATTGGTTCTATAAGCGAAATGGACAAGGAACCTCGAATTAATGAAAGCCGAATTAGAAAACATACTCCAAACGAAGTTTGTGAAGTTCGAAGAGAGCTTTATGCTTCTGTAGACTTGCAAAGTAACGGAATCTTGGATGATGAGCAACAAGTAACTCAGGGTGGAAAAAATAGCAAAAGGGAAATAACTCATGTTTCAACTGAACAATGTTGTCCTTCGTCTGGGCAGTGTCAGATTGAAAGTGTAAAAAAAATTGAGGGCTCTGTTTGCAGTTATGCTGCAAAAGGTGAAAATAAAAGCGTAACTTCAATAGAGTTAGGATGTTCTGAAGTTTCAGTGGAAGCCTGTCCTAACAAAGACTCCTGTATGCAATTTATTCCAGATAAAGAAAAAGAAATGACAAATCAGTCAGTTAGAATTGATGAGGAACTTTTCTCTGGATCGGATACCTCGATAAAAGAGTCTTTCCCATCAGTGCAAGAATGCTCAAAAATTGAGAACGAGATTTATGTTACAGAAAACATAAATGAAATCAAAGCTGATTTGTCACAATATAAAAGGGGGCTGGAGAGTTGTGAGTTAGCTACAGAAGTTCCCAGATTAAATTCTGGGAATAAAAAAAAGAGGAAAGTGGAACGAACAGGGAACCGATCTAATTCTGACAACTTTATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGCTGGGAAGTTTACCGCTGGAAAAAGTGGAGTGGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAACGGGCAAGGAGATCTTCTGAAGTTTTGGTTCTGCACAAAAATAAAAAAGATGGTGTTAAAAAGTCCCACAAGTGCGACCTCGATGGTTGCCGAATGAGTTTCAAGACTAAGGCAGAGTTACTGTTGCATAAACGAAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGTTCCCACAAATATGCTTTACTTCACCAGCGAGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCGTTCAAGTGGGCTTGGGCAAGGACAGAGCACATACGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTGGAGGGATGCGGCCTTTCATTCAGGTTTGTATCTGATTTTAGCAGACACAGACGGAAAACGGGACACCATGTGAAACCTCCTGCTTGA 4560 0.4103 MGSVEIPNWLKELPLAPEFRPTDTEFADPIAYISKIEKQAASFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLGPDNSSLGVCNSLKFGSGDGSSDGVSRAVFTTRHQELGQSQSVKKAKGTVQNPQSGVHKQVWQSGEVYTLEQFESKSKSFARSLLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRLRKRTYYKSRLDSSDCKQTVMGCGRDTQIDDTKGASVQSDADKCLRMAKSVDTVSTFSSNDDSQSFKEKSSDTGNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYGGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLSVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEAAKRAVLWNAELLPDSSKGFQLPDLTSPTGTSVANMPNISSAKKSGHYLLDDEMSLYMDSLTNIDIGGDDLPYHFETDSGALACVGCGILGFPFMAVIQPTEKLTMELPDNHLIQVSSSDSTAGLHSSISRDLSFSELSSVKEMPDQSLNKCSKCWNTSSKFFRPRIFCLGHAVQIVDMLQSKGGANVLIICHSDYQKIKAHASEVAVEIHSAFDYNEVPLDTASPENLTLIDLAVDGEELDECEDWTSTLGINLRNWVHARNNAPSKQVPWTLGTLFHDKCPASKVLALNWQSRRFRSKRSSHLTQTNSSHSIERKKDDQLGGRINDSTADKKLIQYSRRKFKSKHTCFPVANMVCELQEKSQKVSATLSADHNNCVSKTLQAEDLRTECALPCSSVCNEMSSMHPEIQIAEMPISTKMSAAKSQPSNSIPDHVLMIEKLGAEIENQTKQESYVDRNNDLTVSHSKMHHNTDVSEICGKESQDCQYKKCSSTLSNAPDGNIEMIKMTEIAEAVIIDSQCNRLTLDDQGHQEYQSNYKSNNEEAAVSTASMVNQSTLASVDGNVESPNNNHISERISSPIFLENANDEGIGSISEMDKEPRINESRIRKHTPNEVCEVRRELYASVDLQSNGILDDEQQVTQGGKNSKREITHVSTEQCCPSSGQCQIESVKKIEGSVCSYAAKGENKSVTSIELGCSEVSVEACPNKDSCMQFIPDKEKEMTNQSVRIDEELFSGSDTSIKESFPSVQECSKIENEIYVTENINEIKADLSQYKRGLESCELATEVPRLNSGNKKKRKVERTGNRSNSDNFIRSPCEGLRPRAGKFTAGKSGVEINQVDKENQVAKRARRSSEVLVLHKNKKDGVKKSHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPPA* 1520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1992 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1457 1486 IPR013087 -
Vra8g1992 1519 SMART cupin_9 293 462 IPR003347 -
Vra8g1992 1519 MobiDBLite consensus disorder prediction 1326 1349 - -
Vra8g1992 1519 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1031 1508 - -
Vra8g1992 1519 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1030 - -
Vra8g1992 1519 SMART JmjN_1 15 55 IPR003349 -
Vra8g1992 1519 MobiDBLite consensus disorder prediction 835 861 - -
Vra8g1992 1519 Pfam jmjN domain 17 50 IPR003349 -
Vra8g1992 1519 MobiDBLite consensus disorder prediction 264 288 - -
Vra8g1992 1519 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1031 1508 - -
Vra8g1992 1519 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1030 - -
Vra8g1992 1519 SMART c2h2final6 1427 1451 IPR013087 -
Vra8g1992 1519 SMART c2h2final6 1404 1426 IPR013087 -
Vra8g1992 1519 SMART c2h2final6 1487 1513 IPR013087 -
Vra8g1992 1519 SMART c2h2final6 1457 1481 IPR013087 -
Vra8g1992 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1427 1456 IPR013087 -
Vra8g1992 1519 SUPERFAMILY beta-beta-alpha zinc fingers 1428 1464 IPR036236 -
Vra8g1992 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1429 1451 IPR013087 -
Vra8g1992 1519 Gene3D Classic Zinc Finger 1425 1513 - -
Vra8g1992 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1487 1518 IPR013087 -
Vra8g1992 1519 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Vra8g1992 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1489 1513 IPR013087 -
Vra8g1992 1519 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Vra8g1992 1519 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Vra8g1992 1519 SUPERFAMILY Clavaminate synthase-like 294 460 - -
Vra8g1992 1519 Gene3D Cupin 9 466 - -
Vra8g1992 1519 MobiDBLite consensus disorder prediction 845 861 - -
Vra8g1992 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1459 1481 IPR013087 -
Vra8g1992 1519 SUPERFAMILY beta-beta-alpha zinc fingers 1467 1517 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1992 Vra-Chr8 37631698 37642225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1992 1 893 C2H2 Transcription Factor Family AT5G04240 55.055 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1992 JmjC 2.5e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1992 - - gmx:100799861 2454.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1992 8 37631698 37642225 Vra8g1992 8 37631698 37642225 ECH