Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1988 ATGATACCATGCCCTCTAGGTTCATATTGCCCTCTTGCTAAACTCAATAAAACAACTGGCGTATGTGAACCATATCTTTATCAGCTGCCTCCAATGCAGCCAAATCATACCTGTGGAGGAGCAAATGTTTGGGCTGACGTTAGTAGCAGTAGTGACATATTTTGCTCAGCTGGATCGTATTGTCCAACAAGCATAAAAAGAATTTCTTGCAGTAGTGGACATTACTGCAGGATGGGTTCCACATCCGAGAAAAGATGCTTCAAGTTGAGTTCATGTAATTCAAACACAGCAACCCAAAATATGCGTGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAATTGTTCTGACCAAGTTCTCACTACTAGGGAAAGAAGAGTGGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAGGAAGACTGCAAATGCGCGCCAAAGATGGCAATTTGCAAAAGATGCAACTAAGAAGGGTGCAATGGGGCTGCAAGCTCAACTATCTCGCACCTTCAAGAAGGATGCAGGAAATCTGGAAAAATTTAAAATTCTGAAACAAGCAAATTCTGAAGCAGACGTTGAATTGTTGTCACATCCACGACCTACAACTTCAAGCATGGTTGCAAGTTCATCTGTGGCAACAAATAAAAAGGGAAAAGAACCCAGTGGTCTGATGCAGATGATACACGAAATTGAAAATGATCCTGATATCGATGATATTGAAAATGATCCTGATACAGAAATAGAAACTAGAGGTAAAAGTGTCACAGAAAATGTGTCAAAGGGAAAACAACCACATACTCATAGCCAAATTTTTAAGTATGCATATTCTCAGCTTGAAAAAGAGAAAGCTCAGCAAAAAGAAAACAAGAAGCTTACCTTCTCCGGGGTAATTAAAATGGCTACAAACACTGAAAGAAGGAAAAGGCCTTTAATTGAAATTTCTTTCAAGGATCTGACTCTTACATTGAAAGCTCAAAACAAGCATATATTGAGATATGTTACCGGGAAAATTAAACCTGGCCGCATCACGGCTGTCATGGGTCCATCGGGGGCGGGCAAGACAACATTTCTTTCAGCTCTAGCTGGAAAGGCATTAGGATGCTCGGTCACTGGTTCAGTTCTTATAAATGGAAGGAATGAATCAATCCATTCCTTTAAGAAAATTACTGGTTTTGTGCCACAAGATGATGTAGTTCATGGAAACCTAACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCTGTTGACTTGTCAAAACCAGAAAAAGTTCTGGTTGTCGAAAGAGTTATTGAATTCTTGGGGCTTCAATCAGTGCGTAATTCCTTGGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGCCAAAGGAAGCGTGTAAACGTTGGACTGGAAATGGTTATGGAACCTTCACTGTTGATCTTGGATGAACCCACATCTGGCTTAGACAGTGCATCTTCTCAGCTGCTTCTAAGAGCACTAAGACGCGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTGTACAAGATGTTTGATGACCTGATACTTCTGGGAAAAGGTGGTCTTACTGTCTATCACGGATCTGCAAAGAAAGTTGAAGAATACTTTTTGGGCCTGGGGATCAACATTCCAGAGCGGATTAATCCTCCAGATTACTTCATTGACATTTTGGAGGGCCTGACAGCACCTGGCGGAAGCTCAGGACTGAGTTACAAGGACCTGCCAGTTAGATGGATGCTTCATAACGGATATCCAATACCTCTTGATATGAGGCAGAATGCGGTTCAATATGATATGTCACACAGTGTAAATTCAGCTAATGAAATTGATCCCCATGGATCCAGTCATGCAGACAAAACCTTTGCTGGAGAATTATGGCAAGACATGAGAAACAATGTGGAACTGAGGGGGGAGAAGATAAGACACAATTTTTTTAAATCCAAGGATTTATCTGACCGGAAAACTCCTGGCGTTTTCAAGCAATATAAGTATTTTCTTATACGGGTTGGGAAGCAGCGGCTACGAGAAGCTAGGATGCAAGCCATAGATTATCTTATTTTGTTACTTGCTGGAGCCTGCTTAGGATCACTTACAAAAGGCAGCGAGCAAACGTTTGGTGCAGCTGGTTATACCTATACGGTGATTGCTGTATCTCTTCTGTGCAAAATAGCGGCCTTGAGATCATTTTCCTTGGAAAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTCTCTAAAGACACCCTAGATCATTTTAACACAGTGATTAAGCCTGTGGTGTACCTTTCTATGTTCTATTTCTTCACCAATCCGAGATCAACTTTTGCAGATAATTATATTGTGCTGCTTTGTCTTGTGTACTGTGTTACTGGTATAGCATATGCACTGTCCATATTTTTTGAACCCGGTGCTGCCCAGTTATGGTCAGTACTTCTTCCCGTTGTTTTAACTCTCGTTGCAACACAACGAAAGGATAGTAAAATTTTGAAGGATATAGCTAATTTATGCTACTCTAAGTGGGCTTTACAAGCTTTAGTTGTTGCAAACGCTGAAAGGTATCAGGGGGTGTGGCTCATAACTCGTTGTGGTTCACTTTTGAAAAGTGGCTACAATCTTCATGATTGGAGTTTGTGCATATCCATCCTCATTCTTATGGGTGTAATTGGCCGGGCTATAGCATTTTTCTGCATGGTAACCTTCCGAAAGAAGTAA 2784 0.4152 MIPCPLGSYCPLAKLNKTTGVCEPYLYQLPPMQPNHTCGGANVWADVSSSSDIFCSAGSYCPTSIKRISCSSGHYCRMGSTSEKRCFKLSSCNSNTATQNMRAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANARQRWQFAKDATKKGAMGLQAQLSRTFKKDAGNLEKFKILKQANSEADVELLSHPRPTTSSMVASSSVATNKKGKEPSGLMQMIHEIENDPDIDDIENDPDTEIETRGKSVTENVSKGKQPHTHSQIFKYAYSQLEKEKAQQKENKKLTFSGVIKMATNTERRKRPLIEISFKDLTLTLKAQNKHILRYVTGKIKPGRITAVMGPSGAGKTTFLSALAGKALGCSVTGSVLINGRNESIHSFKKITGFVPQDDVVHGNLTVEENLWFSAQCRLSVDLSKPEKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALYKMFDDLILLGKGGLTVYHGSAKKVEEYFLGLGINIPERINPPDYFIDILEGLTAPGGSSGLSYKDLPVRWMLHNGYPIPLDMRQNAVQYDMSHSVNSANEIDPHGSSHADKTFAGELWQDMRNNVELRGEKIRHNFFKSKDLSDRKTPGVFKQYKYFLIRVGKQRLREARMQAIDYLILLLAGACLGSLTKGSEQTFGAAGYTYTVIAVSLLCKIAALRSFSLEKLHYWRESDSGMSSLAYFLSKDTLDHFNTVIKPVVYLSMFYFFTNPRSTFADNYIVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLVATQRKDSKILKDIANLCYSKWALQALVVANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIGRAIAFFCMVTFRKK* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1988 927 Gene3D - 318 553 IPR027417 -
Vra8g1988 927 MobiDBLite consensus disorder prediction 204 228 - -
Vra8g1988 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 550 IPR027417 -
Vra8g1988 927 Pfam ABC transporter 339 489 IPR003439 GO:0005524
Vra8g1988 927 MobiDBLite consensus disorder prediction 204 223 - -
Vra8g1988 927 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 320 562 IPR003439 GO:0005524
Vra8g1988 927 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 924 - -
Vra8g1988 927 CDD ABCG_EPDR 318 544 - -
Vra8g1988 927 SMART AAA_5 346 538 IPR003593 -
Vra8g1988 927 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 1 924 - -
Vra8g1988 927 Pfam ABC-2 type transporter 518 927 IPR043926 GO:0140359
Vra8g1988 927 ProSitePatterns ABC transporters family signature. 461 475 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1988 Vra-Chr8 37603678 37610512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1988 315 521 Calmodulin-binding Proteins AT2G36910 27.830 9.40e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1988 - - gmx:100775464 1617.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0852 8 17996774 18003841 Vra8g1988 8 37603678 37610512 ECH
Vra8g1988 8 37603678 37610512 Vra8g1988 8 37603678 37610512 ECH