Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1970 ATGGCGGCAGCTTCCTCATCCACTCCATTCTTGGGAATCAGAGAAGAAAGCCCTCAGATTACAGCACACCATCAACCCTCCACTGTGGCTCCAATCACAGTTCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAAATCCAGACGCAGAGGTGATAGAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGATTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCAAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGTGTCCATCATGATCCTTCAAGGGCCTTGGGAGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAATGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCGTTCTGTGATGCGCTGGCACAAGAGAGTGCAAGATTCCCCAGTAACTTAAACCCTTTGGGGAGTCATTTGTTTGGCACAAACCACACTAGTTTAACCCTATCCCAAGTGGGTACTCAACTTTCCCAAGTTCAAAATCAGAACCAAACAACCTCTAACAACATCTTGCGCCTTGGAAATGTTGGTGCAGCTGTAAAGTTTGAGCACTTGATTCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCTTCAGCTTTCTTCATGAATGACACCACCAATCAAACATTATTTGAAGAACACCAATCGCAACAAGGACCAATATTCTCAAACAAACAACTACATGGCCTAATGCAGCTCACTGATCTTCATGGCAACACCAACAACTCCGATTCTTCATCAGTTGCTGCTCCTGATTCCAATCTTTTCAACCTCAGCTTCTTCCCTAGTAGCAATGGCCCTAACACCATTATCTCTGGTCAATTCAACAACATAAGCGGTGGTGACCACGGAACAACGCCACCACCACTCTATGTTAATAACAACCCTGCAGTAACTGACCATCTTGGTTCGGGTTTTTCTTCGTTCTTTGGTGATTCATTAGAAAACGTATCGTCCCCTCATATGTCTGCCACTGTGTTGCTTCAAAAAGCGTCACAAATGGGTTCGACCACAACCTCCGGCGGTTCTTCTTTACTTAGAGGAATGTGTAGCAATAATGGTTCCAAAGCTGAAAATGGTCACCACCACCACCACAGTCTTCAAGGGTTGATGAACTCTATCGCCAATGGAAACACGTCCTTGTTTAGGAACATGCAAGGGAACGAAAACAACCTTTGTGGCTTTCACAACTTGGACGAGTCCAACAATAAGTTGCCCCAGAATCTTAGTGTAAACTTTGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGGTGAGAAATATGAATGGTGGATTTTCACAGAGAGAACAACTACAACAACAACGTGTCATGGGTACTGAGTTCTTTGGACCTTGA 1605 0.4442 MAAASSSTPFLGIREESPQITAHHQPSTVAPITVPQKKRRNQPGTPNPDAEVIELSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARFPSNLNPLGSHLFGTNHTSLTLSQVGTQLSQVQNQNQTTSNNILRLGNVGAAVKFEHLIPPLNQSSFGHSPQSMPSSAFFMNDTTNQTLFEEHQSQQGPIFSNKQLHGLMQLTDLHGNTNNSDSSSVAAPDSNLFNLSFFPSSNGPNTIISGQFNNISGGDHGTTPPPLYVNNNPAVTDHLGSGFSSFFGDSLENVSSPHMSATVLLQKASQMGSTTTSGGSSLLRGMCSNNGSKAENGHHHHHSLQGLMNSIANGNTSLFRNMQGNENNLCGFHNLDESNNKLPQNLSVNFGGSDKLTLDFLGVGGMVRNMNGGFSQREQLQQQRVMGTEFFGP* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1970 534 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 520 - -
Vra8g1970 534 SMART c2h2final6 142 162 IPR013087 -
Vra8g1970 534 SMART c2h2final6 66 88 IPR013087 -
Vra8g1970 534 SMART c2h2final6 107 137 IPR013087 -
Vra8g1970 534 MobiDBLite consensus disorder prediction 1 43 - -
Vra8g1970 534 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vra8g1970 534 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vra8g1970 534 MobiDBLite consensus disorder prediction 1 50 - -
Vra8g1970 534 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Vra8g1970 534 Gene3D Classic Zinc Finger 120 198 - -
Vra8g1970 534 Gene3D Classic Zinc Finger 48 116 - -
Vra8g1970 534 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 520 - -
Vra8g1970 534 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1970 Vra-Chr8 37308174 37312410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1970 36 513 IDZ Gene Family AT2G02070 47.238 1.96e-125 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1970 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1970 K25870 - gmx:100780268 832.402