Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1969 ATGGGAAGAAAGGGAAATTGTGAGAATCAATATGCTATGAACAGAGGTCCTTGGTCTGCTGAAGAAGACAAAATTCTTATGAACTACGTTCAAGTCCACGGAGAAGGTAAATGGAGAGAGCTTTCCAAAAGAGCAGGGTTGAAAAGATGTGGTAAGAGTTGTAGACTTCGATGGTTGAATTATCTAAAGCCAGATATTAAGAGAGGAAACATTTCTTCTGATGAAGAAGATCTCATTATCAGATTACATAAACTCTTAGGGAATAGATGGTCTCTCATTGCGGGACGATTACCAGGGAGAACAGACAACGAAATTAAGAACTACTGGAATACTTATTTGAGAAAGAAGGTAGAGCACAAGCACAATCAAAACGACAACATTCCTATCAACTTAAGCTCGAAAAGTTCCTTGGGTGATGTTCTTGATCCTACAAAATCCGCTCACCCAATGATGATTAAGCCCAAATCAATGAGGTGTACCAAGGTTATGATGCCAGGCAATGATTCGGTGAACACCATGAATTTGATCGCGACGACCTGGGACCATAACCCTTCTGCATCCATGCCACAAGATGAACATAACCACTGTTTAACCGGTGTTCTTCAAGACTTTGACATCGGTGACTTTTTAATGTCGTACGAGGATGATTGTCGTTTCAATGGGTATGCTTGTGTTGAAATACCCCAACATATTTTTGAAGATCAGACTTGGAGGCTTGATGATTCCATGGTTGAAGCAACCTGGTACGAGAATTGGAAGCACGACGCCTACTTTTCACAAGAACAAGATATGGACATGGATATGGGCTTTTCTTCATTTTAA 822 0.4051 MGRKGNCENQYAMNRGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEHKHNQNDNIPINLSSKSSLGDVLDPTKSAHPMMIKPKSMRCTKVMMPGNDSVNTMNLIATTWDHNPSASMPQDEHNHCLTGVLQDFDIGDFLMSYEDDCRFNGYACVEIPQHIFEDQTWRLDDSMVEATWYENWKHDAYFSQEQDMDMDMGFSSF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1969 273 Gene3D - 15 67 - -
Vra8g1969 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra8g1969 273 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 270 - -
Vra8g1969 273 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 270 - -
Vra8g1969 273 CDD SANT 72 113 IPR001005 -
Vra8g1969 273 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vra8g1969 273 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vra8g1969 273 SMART sant 14 64 IPR001005 -
Vra8g1969 273 SMART sant 67 115 IPR001005 -
Vra8g1969 273 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vra8g1969 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra8g1969 273 Gene3D - 72 136 - -
Vra8g1969 273 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Vra8g1969 273 CDD SANT 17 62 IPR001005 -
Vra8g1969 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1969 Vra-Chr8 37301723 37303066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1969 7 117 MYB Transcription Factor Family AT3G13540 72.072 2.61e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1969 Myb_DNA-binding 9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1969 K09422 - gmx:100794570 462.225