Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1968 ATGAAAAGAAAGGGAGCCTATGAGAACCAGGAAGCTGTGAACAGAGGTCCTTGGTCTGCTGAGGAAGACCAAATTCTTATTAACTACGTTCACCTCCATGGCGAAGGAAAATGGGGGCAGATTTCCAGAAGAACTGGTTTAAAGCGAGGGGGAAAGAGTTGCAGACTTCGATGGTTGAATTATCTAAAACCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATTATCAGACTACATAGCCTCTTAGGGAATAGATGGTCGCTTATTGCGGGAAGATTGCCTGGGCGAACAGACAATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAAGTAGAGGAGAAACACAATGATAACAACAACAACATTCCTGTGGAATTAAGAATGGAATCTCCAAACGCTTTTGGTATTGCTATTGATCCTGCGAAATCTTCTGAAGCAGTAATGTGTACAGAGGTTATGATGGCAACTGAAGCAGTGAATGATTCAGTGAACGCAAAAAGTTTAATTTCAACAAATTATAATGAAAACCCGTTTGCGTCTGTCCCAGCAGATCATCCAGAAGGTTTGGGCAGACAGTTTGATTTAACTGAGCTGTTAATGCCGCAGGAGGATTGTGATTTCAATGGATATGCTTGTGTTGAAATACCCCCACATTTTGGAGAACACTCCTGCAGGGTTAATGACGCCATGTGTGAAACATGGTACGATGATTGGAAGAATGAAGACTATTTTCCACTAGACTATGATATGGATTTTCCTTTATTTTAA 786 0.402 MKRKGAYENQEAVNRGPWSAEEDQILINYVHLHGEGKWGQISRRTGLKRGGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEEKHNDNNNNIPVELRMESPNAFGIAIDPAKSSEAVMCTEVMMATEAVNDSVNAKSLISTNYNENPFASVPADHPEGLGRQFDLTELLMPQEDCDFNGYACVEIPPHFGEHSCRVNDAMCETWYDDWKNEDYFPLDYDMDFPLF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1968 261 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra8g1968 261 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Vra8g1968 261 Gene3D - 71 136 - -
Vra8g1968 261 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 258 - -
Vra8g1968 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vra8g1968 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra8g1968 261 CDD SANT 72 113 IPR001005 -
Vra8g1968 261 SMART sant 14 64 IPR001005 -
Vra8g1968 261 SMART sant 67 115 IPR001005 -
Vra8g1968 261 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vra8g1968 261 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vra8g1968 261 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vra8g1968 261 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 258 - -
Vra8g1968 261 CDD SANT 17 62 IPR001005 -
Vra8g1968 261 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1968 Vra-Chr8 37289329 37290648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1968 8 137 MYB Transcription Factor Family AT5G52600 63.846 1.35e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1968 Myb_DNA-binding 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1968 K09422 - gmx:547459 366.696