Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1967 ATGACCGAAGAAAGTGCTGGAAACACAGTTGCAACCTCTATCACCCCATTAAACTGGTGGTATCTCCAGGCAAATTCTATTTCTTCCTGGAACGATTCTAATAACACATGGAACAACCAACCAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCATTCAACCCTCACTGTTGAGTCCTCTCGCAGACTCATTGACCCTCCTGCTCCTTCCTCCAACGACTTCATGGGAGAACATGCTTCGGATAATCAACTTTGGACCCATGTTCTATCAGGTGTTGGATCGAACGGCGAGTTACAGAGCGGCCAAGATATTGGAGAGAACTTTCTGGGTGCACTGTCATCAAAAAGCATGACAAGCACTATGTTTCAACCAGTGTGTGACTACTTGAAGAAACTTGATCATACCAGTTGGGAATATAGTGGTTCAACTTCATTAAACAGTTTTGAGAAGCATTTAAATGGGTTCAGTGAGGCGATGATTGAGAATAATGAAAGGTTGACCAAGTTATCTAATCTTGTAAGCACTTGCTCTATTGCCCCGCCAGACCCGGAAGTAAGTAGCCACTTTGATCCACAAACAAACAACATGACCTTGAATTCTTCCATGGATCATTTCCCACAATCTGATCACTTCAAGCAACCTTTTGGAGACTCCACATGCTCTCTTGGAGGAGTAGCAAACAGAAATTCTGGAGTGTTCCCATCCTATGATCATGACACCAAGGTCAAGCAAGAGTTTCATGCAAGTGAAGTGCAAGGATCTGTATATGGGAAATCATTAAATGCAAATGGGTATCAAAATGGATTTAATGGCTTTTCAGTGGGTGATAGTTGCAAACTCTACCATGGGATGCCCAATCTTCCTCCATGCACAAGAAATTTCTCAGATGTTATATCCTTTAATAGTCGATTTGGAAGGCCAGTTATTGGAATCCATGCTCAGAAGCCTAGCATGAAGTATCTGAACGCATCTGAACCAAAGAAACAGGGTCTTCAAGCACCATCACCGATAAGAAGTAATATTAATGGAAAAGGGGAGGGCACAACACGTGAAGTAAAGAAGAAAAGATCAGAAGAATCTTCAGATGCAATGTTAAAAAAGCTTAAGCAAGATACATCAACAGTTTCTTCTTCAAAGGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACTGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCTTACTTGAAGGCTAACTGTCACAAGGATCCATGGGGAAGCTTGGATAGAAAAGATAAGGACGATACAAAGCTAGATCTTCGGAGCAGAGGTCTTTGTTTAGTTCCTACTTCATGTACTCCTCTAGTTTACAGAGAGAGCAGTGGACCAGACTACTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1518 0.4216 MTEESAGNTVATSITPLNWWYLQANSISSWNDSNNTWNNQPNPNSSSSCEEDISVSTSFTNASNHSTLTVESSRRLIDPPAPSSNDFMGEHASDNQLWTHVLSGVGSNGELQSGQDIGENFLGALSSKSMTSTMFQPVCDYLKKLDHTSWEYSGSTSLNSFEKHLNGFSEAMIENNERLTKLSNLVSTCSIAPPDPEVSSHFDPQTNNMTLNSSMDHFPQSDHFKQPFGDSTCSLGGVANRNSGVFPSYDHDTKVKQEFHASEVQGSVYGKSLNANGYQNGFNGFSVGDSCKLYHGMPNLPPCTRNFSDVISFNSRFGRPVIGIHAQKPSMKYLNASEPKKQGLQAPSPIRSNINGKGEGTTREVKKKRSEESSDAMLKKLKQDTSTVSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKANCHKDPWGSLDRKDKDDTKLDLRSRGLCLVPTSCTPLVYRESSGPDYWTPAYRGCLYR* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1967 505 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 491 - -
Vra8g1967 505 MobiDBLite consensus disorder prediction 360 379 - -
Vra8g1967 505 PANTHER TRANSCRIPTION FACTOR BHLH111 31 491 - -
Vra8g1967 505 CDD bHLH_AtbHLH_like 399 441 IPR045239 -
Vra8g1967 505 MobiDBLite consensus disorder prediction 33 53 - -
Vra8g1967 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 384 433 IPR011598 GO:0046983
Vra8g1967 505 MobiDBLite consensus disorder prediction 338 388 - -
Vra8g1967 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 451 IPR036638 GO:0046983
Vra8g1967 505 Gene3D - 396 452 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1967 Vra-Chr8 37269682 37273124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1967 23 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.534 1.25e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1967 - - gmx:100527800 853.588