Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1963 ATGATGCCCCCTGAGCAAGAAACCTCTATTTCACCAAACATTCCACCCATATCAACCCGACCAGAGACCAGCTCGGTCCATCATGAACCAGAAGGTTCTGCTACTAACAAAATCAAACCAAGTTTGGAATTGGATGATAATGGCATTCCCTCGCACCATCAGACTCAGCCAACTCCACCACCACCACCAAGATTATCCGTTCTTCACCAATCCTTGCGCCCCATTACCCTCAAATTCGAAGACGTGTCCTACACTATAACCTACGAGAGCCAGAAGAAGAAGGGTTGCGTTTTACGTAATGAGTCCAAGCTAAGAAGAAAGGTGCTGAGCGGTGTGACCGGAGTAGCGAATCCCGGTGAGTTAACGGCAATGCTGGGTCCTTCCGGGAGCGGCAAGACGACCCTCTTAACCGCCCTGGCGGGGAGGCTTGCGGGAAAAGTGTCCGGCACGATAACGTACAACGGACACAGCGACAGCTCCTTCGTGAAACGCAAGGTTGGGTTCGTTCCCCAAGACGACGTTCTCTACCCTCACCTCACAGTGTTGGAGACTCTCACTTACGCAGCTCTATTGAGGCTACCCAAGAGTTTGAGCAGGGAAGAGAAGAAGGAGCACGCAGAGATGGTGATCGTGGAGCTTGGCCTCACACGATGCCGTAATAGCCCTGTTGGAGGTTGCATGGCTCTGTTCCGGGGCATTTCGGGTGGGGAACGGAAACGGGTCAGTATTGGGCAGGAGATGTTGGTCAACCCGAGTTTGTTGTTCGTCGATGAGCCAACTTCGGGTTTGGACTCCACAACGGCCCAACTTATTGTGTCCGTGCTCCGCGGGCTCGCCCGGGCGGGTCGGACCGTAGTCACCACCATCCACCAGCCTTCCAGCCGGTTATATAGGATGTTTGATAAGGTGGTGGTCTTGTCTGAAGGGTATCCTATTTACAGCGGGCATGCGGATCGGGTCATGGACTATCTCGGATCCATTGGGTATGTCCCGGCTTTCAATTTCATGAACCCGGCTGATTTCCTCCTTGACCTTGCCAATGGCATAGTTGCTGATGTCAAACATGATGATCAGATAGACCACCATGAGGATCAAGCTTCAGTCAAACAGTACCTAATTTCATCCTTTAAGAAGAACTTATACCCTGCTCTTAAGGAAGACATTCAACAAAATAGCAGTGACCCTCTGGCTTTTACATCAGGAACACCTAGACGCTCTGATAACCAATGGACTAGCAGCTGGTGGGAGCAATTCAGGGTGCTTCTTAAGAGAGGTTTACAAGAGAGGAGGCATGAATCTTTTTCTGGTTTAAGGATTTTCCAAGTCCTGTCTGTATCGATTCTCTCAGGACTTTTGTGGTGGCACTCTGATGCTGCACATGTTCAAGATCAGGTGGGACTCCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTCAATGCCATCTTTGCATTTCCTCTGGAGAGGCCAATGCTAATAAAGGAAAGATCTTCAGGGATGTACCAACTCTCCTCGTACTATGTTGCCAGGATGGTGGGGGACTTGCCAATGGAGCTAGTGCTTCCAACCATATTTGTAACTATTTCCTATTGGATGGGTGGTCTCAAACCTTCGTTGGTCACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTGCTAGTGTCTCAAGGCATAGGCCTAGCACTTGGTGCCATCCTCATGGATGTGAAGCAGGCCACAACTCTCGCTTCAGTGACCATGCTGGTGTTTCTCTTGGCTGGTGGTTACTATATTCAGCAAATGCCTGCTTTTATAGCTTGGTTGAAATACATTTCTTTCAGTCACTACTGCTATAAGCTTCTGGTAGCAGTTCAGTATCCAATAAATGAAGTATATGAGTGTGGACCAGGGTTACATTGTAGAGTGAGAGATTTCCCTGCAATAAAGTGTCTGGAGCTTGGTGATAACATGTGGGGTGAAGTGGCTGCATTGACTGTAATGTTAATTGGATACAGAATTGCAGCATATCTAGCCTTGAGGATGGGGCAGCCTCACTGA 2046 0.4878 MMPPEQETSISPNIPPISTRPETSSVHHEPEGSATNKIKPSLELDDNGIPSHHQTQPTPPPPPRLSVLHQSLRPITLKFEDVSYTITYESQKKKGCVLRNESKLRRKVLSGVTGVANPGELTAMLGPSGSGKTTLLTALAGRLAGKVSGTITYNGHSDSSFVKRKVGFVPQDDVLYPHLTVLETLTYAALLRLPKSLSREEKKEHAEMVIVELGLTRCRNSPVGGCMALFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSVLRGLARAGRTVVTTIHQPSSRLYRMFDKVVVLSEGYPIYSGHADRVMDYLGSIGYVPAFNFMNPADFLLDLANGIVADVKHDDQIDHHEDQASVKQYLISSFKKNLYPALKEDIQQNSSDPLAFTSGTPRRSDNQWTSSWWEQFRVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDAAHVQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYQLSSYYVARMVGDLPMELVLPTIFVTISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPAFIAWLKYISFSHYCYKLLVAVQYPINEVYECGPGLHCRVRDFPAIKCLELGDNMWGEVAALTVMLIGYRIAAYLALRMGQPH* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1963 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 77 333 IPR003439 GO:0005524
Vra8g1963 681 MobiDBLite consensus disorder prediction 1 67 - -
Vra8g1963 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 50 678 - -
Vra8g1963 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 327 IPR027417 -
Vra8g1963 681 Pfam ABC-2 type transporter 416 622 IPR013525 GO:0016020|GO:0140359
Vra8g1963 681 CDD ABCG_EPDR 74 315 - -
Vra8g1963 681 Pfam ABC-2 type transporter 290 354 IPR043926 GO:0140359
Vra8g1963 681 MobiDBLite consensus disorder prediction 1 31 - -
Vra8g1963 681 ProSitePatterns ABC transporters family signature. 233 247 IPR017871 GO:0005524
Vra8g1963 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 678 - -
Vra8g1963 681 SMART AAA_5 118 311 IPR003593 -
Vra8g1963 681 Pfam ABC transporter 111 261 IPR003439 GO:0005524
Vra8g1963 681 Gene3D - 92 327 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1963 Vra-Chr8 37214350 37218727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1963 107 309 Calmodulin-binding Proteins AT2G36910 29.384 7.80e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1963 K05681 - gmx:100783696 1226.08