Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1959 ATGTCTGAGACGATTGTGGCACATTCGAGTTCTTGGAGCAGGGCACTTGTCGCGATCCCGCCCTACACCTTCTCCGCCATCAGTATCGCGGTCGCAATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACCGGTAGTAGCTTGATCGGCGCTGCAATCAAGGCTCCTCGAATCACTTCCAAAAATCTCATTAGTGTATTCTTCTGAGAAGCTGTTGCTATATATGGTGTTATTGTGACTATTATTCTTCAAACAAAATTAGAAAGCGTTCCAGCAGCAAATATCTACGACCCAGAGTCTCTTAGGGCTGGATATGCAATCTTTGCTTCCGGATTAATATTGGGCTTCGCAAATCTTGTTTGTGGGTGTTGTGTGTTAATTGGAAGCAGCTGAGCATTATCTGATGCTCAGAATTCCTCGCTCTTCGTGAAGATTCTTGTGATTGAGATCTTTGGTAGCGCGCTTGGGCTATTTGGAGTGATTGTTGGAATTATTATGTCAGCACAAACAATATGGTAA 528 0.4602 MSETIVAHSSSWSRALVAIPPYTFSAISIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVFF*EAVAIYGVIVTIILQTKLESVPAANIYDPESLRAGYAIFASGLILGFANLVCGCCVLIGSS*ALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQTIW* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1959 173 CDD ATP-synt_Vo_c_ATP6F_rpt2 105 167 - -
Vra8g1959 173 SUPERFAMILY F1F0 ATP synthase subunit C 102 168 IPR035921 -
Vra8g1959 173 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 5 173 - -
Vra8g1959 173 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 173 - -
Vra8g1959 173 Gene3D - 22 172 IPR035921 -
Vra8g1959 173 SUPERFAMILY F1F0 ATP synthase subunit C 22 88 IPR035921 -
Vra8g1959 173 Pfam ATP synthase subunit C 28 85 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vra8g1959 173 PRINTS Vacuolar ATP synthase 16kDa subunit signature 146 169 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vra8g1959 173 PRINTS Vacuolar ATP synthase 16kDa subunit signature 40 64 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1959 Vra-Chr8 37115470 37118566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1959 8 173 Primary Pumps ATPases(2) AT2G25610 84.615 1.82e-91 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1959 K03661 - gmx:100527177 281.952