Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1950 ATGGACGCTGCCACTTCCACGGACGAAACCACCACCACCACCACCACCGAATCTCTTTCCCTTCCTCCCAACCAATCTCCGCCTCCTCTAATCCGCCTCGGAAGCGCCGCCGTCGAACCCGACGCTGTTTCCGGCGAGGCCGAATCCCGCAAACTTCCCTCCTCCAAATACAAAGGCGTGGTGCCGCAACCCAACGGTCGTTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGTACCTTCAACGAGGAAGATGAAGCCGCCAGAGCCTACGACATCGCGGCGCAGAGGTTCCGCGGGCGCGACGCCGTCACAAACTTCAAGCCTCTTTCCGGAGCAGGCGACGACGCAGAGTCCGAGTTCCTTAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTGCGCAAACACACCTACGACGACGAGCTCCTGCAGAGCACACGCGGCGGCAGGCGACCCCGCGACGCCCAGGCCACCTCGAGCGGCGCGTACGATGTGAAGGCGCGTGAGCAGCTGTTCGAGAAAACAGTCACTCCCAGCGACGTCGGCAAGCTGAATAGATTGGTTATACCGAAGCAGCACGCGGAGAAGCACTTCCCGTTGAGCAGCGGATCCGGTAGCGGAGTCTCGCCGCCCACTGCTGCAGCGGCGGCGGCCAAGGGAGTGCTGTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTTACCAAGGGATGGAGCCGGTTTGTGAAGGAGAATAATCTGAGAGCCGGTGACGCGGTTCGGTTTTTCAAGTCAACCGGACCGGACCGGCAGCTTTATATAGACTGCACAGCCAGGAGCGGTGGCGGTATTTGTGAGCTTAATAACAATAATGGTGGAGGTTTGTTTGTCCCGGTGGGACCAGTTGCTGAGCCGGTTCAGATGGTTCGGCTTTTCGGGGTGAACCTTTTGAAACTACCCGGTTCGGATGGTGTCCGGGTTGGCTATGAAGGGAAGCGGAAAGAGATGGAACTGTTTGCATTCGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1095 0.5772 MDAATSTDETTTTTTTESLSLPPNQSPPPLIRLGSAAVEPDAVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLSGAGDDAESEFLNSHSKSEIVDMLRKHTYDDELLQSTRGGRRPRDAQATSSGAYDVKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSSGSGSGVSPPTAAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKENNLRAGDAVRFFKSTGPDRQLYIDCTARSGGGICELNNNNGGGLFVPVGPVAEPVQMVRLFGVNLLKLPGSDGVRVGYEGKRKEMELFAFECSKKLKVIGAL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1950 364 ProSiteProfiles B3 DNA-binding domain profile. 176 291 IPR003340 GO:0003677
Vra8g1950 364 Gene3D - 164 294 IPR015300 -
Vra8g1950 364 ProSiteProfiles AP2/ERF domain profile. 56 111 IPR001471 GO:0003700|GO:0006355
Vra8g1950 364 SMART B3_2 176 291 IPR003340 GO:0003677
Vra8g1950 364 CDD B3_DNA 175 285 IPR003340 GO:0003677
Vra8g1950 364 Pfam B3 DNA binding domain 176 274 IPR003340 GO:0003677
Vra8g1950 364 SMART rav1_2 56 117 IPR001471 GO:0003700|GO:0006355
Vra8g1950 364 Pfam AP2 domain 55 103 IPR001471 GO:0003700|GO:0006355
Vra8g1950 364 CDD AP2 55 110 IPR001471 GO:0003700|GO:0006355
Vra8g1950 364 SUPERFAMILY DNA-binding pseudobarrel domain 174 281 IPR015300 -
Vra8g1950 364 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 364 - -
Vra8g1950 364 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 364 IPR044800 GO:0003700
Vra8g1950 364 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g1950 364 SUPERFAMILY DNA-binding domain 55 111 IPR016177 GO:0003677
Vra8g1950 364 MobiDBLite consensus disorder prediction 1 66 - -
Vra8g1950 364 Gene3D AP2/ERF domain 55 112 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1950 Vra-Chr8 37012641 37014355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1950 12 364 B3 DNA Binding Superfamily AT1G25560 57.068 2.64e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vra8g1950 B3 2.4e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1950 K09287 - gmx:100789009 546.199