Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1949 ATGCAAAATTTGTTTATTTATGGCCTTTTCTTGTCCCTCTTCACTTACAATTTCTCAGTAGAAAACTCAACCCTCTCCCTCACTTCTTTCTCTCTCTCTCTCTTTCTTTCTCGTCTTATAATATTATCTCCATTGTCCATATCCAAGAACCATATCTCCATGCAGAAAACATACTCTTTCTCCTGCATATCCTCGTGTGGCAGTGATAGTGCCGGCTTAGAAGCTGACGAGGTTGGCAATGAAGATTCCATTTCCCTCTCGCTTGGCCCTCCTTGCCACCACAAATCCCAAGTCCTTAACCCAAAACACACTACTACCGTGCGTGGTCATCAGAAAAACCCTACCTCTGATGACCCCACTGCTGTAACAGTTGCCCTCCACATCGGCCTTCCCACAACCGCTACCAAAACTTCTTCCACTCCGACTCATGCCCGATATTGGATCCCTACTACTCAGCAAATCCTTATTGGACCCACTCAATTCTCTTGCACAGTCTGCAACAAAACCTTCACCCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCAGAGTATAGGAAAGGGTCGGAGTCATTGAGAGGGTCAAAAGCAGGTTCTTCAATGCTGAGGCTGCCCTGCTACTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACACTACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGAAAATGTAAAAAGGCATTTGCAGTGAGAGGTGATTGGAGAACACACGAGAAGAATTGTGGGAGGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGCGGTCCCTGAAAGACCATGTCCGTGCATTTGGCAAAGGGCATGCTCCACACAGCAGCTTGGGAGAAGAAAGAGCAGATGATGGGAGTGAAATGGTGTATTTAGTTTGA 957 0.466 MQNLFIYGLFLSLFTYNFSVENSTLSLTSFSLSLFLSRLIILSPLSISKNHISMQKTYSFSCISSCGSDSAGLEADEVGNEDSISLSLGPPCHHKSQVLNPKHTTTVRGHQKNPTSDDPTAVTVALHIGLPTTATKTSSTPTHARYWIPTTQQILIGPTQFSCTVCNKTFTRFNNMQMHMWGHGSEYRKGSESLRGSKAGSSMLRLPCYCCEEGCRNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCKKAFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGKGHAPHSSLGEERADDGSEMVYLV* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1949 318 Gene3D Classic Zinc Finger 186 270 - -
Vra8g1949 318 SUPERFAMILY beta-beta-alpha zinc fingers 231 266 IPR036236 -
Vra8g1949 318 SUPERFAMILY beta-beta-alpha zinc fingers 152 184 IPR036236 -
Vra8g1949 318 PANTHER ZINC FINGER PROTEIN WIP2 54 305 IPR043584 GO:0003700|GO:0010468
Vra8g1949 318 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Vra8g1949 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 188 IPR013087 -
Vra8g1949 318 SMART c2h2final6 209 241 IPR013087 -
Vra8g1949 318 SMART c2h2final6 161 183 IPR013087 -
Vra8g1949 318 SMART c2h2final6 246 266 IPR013087 -
Vra8g1949 318 PANTHER ZINC FINGER PROTEIN WIP6 54 305 - -
Vra8g1949 318 Gene3D Classic Zinc Finger 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1949 Vra-Chr8 36998966 37000945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1949 79 301 C2H2 Transcription Factor Family AT1G13290 67.672 2.43e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1949 zf-C2H2_6 0.0015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1949 - - vun:114189638 516.153