Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1948 ATGTATTTCTTCACTGAGAAAATGCAGCGTTTGAAGATGGGGTTTCCTGACTACATCCAGGCATTGGAAGAAGAACGCCGTAAGATTCAGGTCTTCTGCAAAGAGCTTCCTCTTTCCTTCGAGCTAGTTACTCAAGCCATTGAAGCTTGCAGACAACAATTGTCTGGCACCACTAGCGAGTACAATTTGAATGGTCAGTCGGAGTGTTCGGAGCGGACAACATCATCGGAAGGACCAGTCTTGGAGGAGTTCATTCCGATCAAGAAAAGGGCATCATCATCCCCCTGTTGCGATGAAGATGACGAAGACTATGAACAGCATTCTCTCAGGCAAACGGTTTTAAATGAGGATAATAAGAACAATGATAAGAGGAAATCCGACTGGCTCAGATCTGTTCAGCTGTGGAATCCAGATCCCCCAGCTGAGGAGGATGCGACTAAGAAAGTTCCTGGGATGGAATTGAAGAGAAGTGGGAGTGGTGGTGGTGCTTTCCAGCCATTCCACAAGGAAGAAAGAGCTGCAAAGGCAACTGAAACATTGTATAAAGCACCCTCTTCAACCCGGGTAGCTGCTGCGAGTTCTAGCGCCGGAGAACTCACCCCAGAAAAAAATCAGAATGAGGGACAGAGAAAGCAGCGCAGATGCTGGTCTCAGGATTTACACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAACAAATCCGAGAGCTAATGAATGTTGACGGTCTCACAAATGATGAAGTGAAAAGCCATTTACAGAAATACCGTTTGCACACCAGAAGGCCAAGTCCCTTGGTTCACAACAGTTCCAGTCCACAAGCAGCGCCTTTTGTCCTTGTAGGGAACATTTTTGTTCAGTCACCAGAATATGCTGCTGTAGCTACCTCAACAGCATCAAGAGAAGTGACCACAGTTACAGCACCTGCTGGAGTTTATGCACCAGTGGCCACACATCCTACGCCTGTTTCACAACCATCAGCCGATTCAATTAAGAAGCCACAGTTTAAGAAATTTAAGCATTCTGAACATTCAAATTCAGATGAAAGGGGTCATCACAGTGAAGGAGCTGTTCATTCAAATTCCCCTACATCATCCTCCTCTACACACACCTCTGCTTCCCCTAGCTATTAA 1155 0.4658 MYFFTEKMQRLKMGFPDYIQALEEERRKIQVFCKELPLSFELVTQAIEACRQQLSGTTSEYNLNGQSECSERTTSSEGPVLEEFIPIKKRASSSPCCDEDDEDYEQHSLRQTVLNEDNKNNDKRKSDWLRSVQLWNPDPPAEEDATKKVPGMELKRSGSGGGAFQPFHKEERAAKATETLYKAPSSTRVAAASSSAGELTPEKNQNEGQRKQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPLVHNSSSPQAAPFVLVGNIFVQSPEYAAVATSTASREVTTVTAPAGVYAPVATHPTPVSQPSADSIKKPQFKKFKHSEHSNSDERGHHSEGAVHSNSPTSSSSTHTSASPSY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1948 384 MobiDBLite consensus disorder prediction 364 384 - -
Vra8g1948 384 MobiDBLite consensus disorder prediction 62 77 - -
Vra8g1948 384 MobiDBLite consensus disorder prediction 179 214 - -
Vra8g1948 384 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 381 - -
Vra8g1948 384 MobiDBLite consensus disorder prediction 340 363 - -
Vra8g1948 384 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Vra8g1948 384 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Vra8g1948 384 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Vra8g1948 384 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 381 IPR044787 GO:0003700|GO:0006355
Vra8g1948 384 MobiDBLite consensus disorder prediction 322 384 - -
Vra8g1948 384 Gene3D - 210 268 - -
Vra8g1948 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Vra8g1948 384 MobiDBLite consensus disorder prediction 62 81 - -
Vra8g1948 384 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1948 Vra-Chr8 36987295 36989606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1948 4 261 G2-like Transcription Factor Family AT1G25550 53.383 2.94e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g1948 Myb_DNA-binding 3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1948 - - gmx:100796683 609.372