Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1942 ATGGAGCTTCTCTCTGTGACTGGCACTCTCTGCAAAGTCCAAACATTTTCCTTTCAGAAATCAAAGACATCCCAAATTCATGATTTTCCAATAAACGTAAGATTACCCAACACAATCAACCATTCCAATCTTTCTTCTTCTTCTTCATGTAATTGGTCTATTACTACTAGGGTAGCAGCAACAACATACCCTTCCTTCAATTCTTCCACCACACAGAACCGCCATTGGATGGTGGTCATGGACACACCTCCTCAAGGGCTCAATTCAAAGTCACATGTCGTTGATTATTATGTCAACATTCTACAAACAGTTCTCGGCAGTGAGAAAGATGCTCAGATGAGTATATATGATGCTTCGTGGGACACCCACTTCGGCTTTTGTTGTGACGTTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTGCCTGGGGTGTTGTTGGTTAGGCCTGACCCGGATTTCAATTCTTTGAAAAAGGACTATAGTTTATCAAGGGACCAGGTGGTTAACCCGTCAGGATTACAAAATATTACCAATATGTTGTTTCCTGCTGGAAATTCTAAGCATTGGCTTGTTAAAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGACGGATGCACAAATGTGTATATATCATGTCTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGACGAGGACTGTGCTCAAGAGCTAGCTGGTGTGCCAGGTGTCTTATCAGTTCAGCCAGATAACAGTTTTGAGTCTGAAAATAAGGATTACGCAGGTAGTACCTTAGAAAATAGTTGGAATTTTTCCAACTCTTCTGAAGCAAGTCATAAAGCGCCCTTGAAAACAAAGAAATTGTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGTAAGCTAGTTGAAGTTAAAGTTATCATAGACAAGATTTCAAAAAGATCCAAGGGTTATGCATTCGTTGAATACACCACAGTGGAAGCTGCCAGTGCTGCGCTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCGCCAAGATACAACAGGAATCGTGCCGAATCATCAAGTTGA 1176 0.4158 MELLSVTGTLCKVQTFSFQKSKTSQIHDFPINVRLPNTINHSNLSSSSSCNWSITTRVAATTYPSFNSSTTQNRHWMVVMDTPPQGLNSKSHVVDYYVNILQTVLGSEKDAQMSIYDASWDTHFGFCCDVDEEISSQLASLPGVLLVRPDPDFNSLKKDYSLSRDQVVNPSGLQNITNMLFPAGNSKHWLVKMDKPGVEVVTKAQIVDYYAQILTKVMGNETDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDNSFESENKDYAGSTLENSWNFSNSSEASHKAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGKLVEVKVIIDKISKRSKGYAFVEYTTVEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAESSS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1942 391 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 39 389 - -
Vra8g1942 391 SUPERFAMILY RNA-binding domain, RBD 287 386 IPR035979 GO:0003676
Vra8g1942 391 SMART rrm1_1 300 373 IPR000504 GO:0003723
Vra8g1942 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 367 IPR000504 GO:0003723
Vra8g1942 391 Gene3D - 269 391 IPR012677 -
Vra8g1942 391 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 181 267 IPR037045 -
Vra8g1942 391 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 59 154 IPR037045 -
Vra8g1942 391 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 39 389 IPR039206 GO:0016554
Vra8g1942 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1942 Vra-Chr8 36932968 36936476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1942 296 386 C2H2 Transcription Factor Family AT2G19380 30.769 5.51e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1942 - - vun:114191397 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1942 8 36932968 36936476 Vra8g1942 8 36932968 36936476 ECH