Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1938 ATGCCCCCACCTCCTTCTATCGTTCCGTTAACAAAACTCAACTCTCTATTTCCCCCCACACGCACACCTCTCTCTGTCTCTCTCTCTCTCACGCACAACACAGCAAACTCCAACTCCATTATTATTACTGTTGTTATTCATAGAATCATTAGCGACACAATGCACTCCTCCGCCGAGGACGACTCCGACAACCCTGCCACCACCGCGGGCTCGGAGTGGACGTTCTCCGCCAGGAACCACGCACCGTCGTCGGACCCCTGCTGGGAAGCCATAGAGCGCGGCGGCGGGACCCTGGGACTGGGCGACCTCCGGTTTGTGCAGCGAGTGGGAAGCGGCGACATCGGAAGCGTGTACTTGGTGGAGCTGAAGGGCTCGAACGGGTGCCTGTTCGCGGCAAAGGTGATGGACAAGAAGGAACTCGTGGCCAGGAACAAAGACACGAGGGCAAAGGTTGAGAGAGAGATTCTGCAAGCGGTGGATCACCCTTTTTTGCCGACTCTTTACGCGTCGCTAGATTCCCCTCGCTGGTCTTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGAGGCAGCCCGATAAACGCTTCCACCACGCCGCCGTTAGGTTCTACGCATCTGAGGTTGTGGTTGCGTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAATGTGCTCATAAGATCCGACGGTCACGTAATGCTCACTGACTTTGACCTCTCACTGAAAGGTGACGACACAACATCAACGGCCCAGATCGTGTTCGATCAAGACCCACCCAGCAACAGCTGTTCCAACGACCATTCCAAGAACCAATGCGCTCCCGCCATGTCATCCTGCATGCTGCCAAATTGCATTGTGCCATCTGTCCCATGCTTCCACCCGAAGCGCGGTCGTAGCAAGAGGTCCTCGAGGTGTGGGTCGGTGGAGATCGTGGCGGAGCCAATAGAAATTCGATCGACGTCGTTCGTTGGGACCCATGAGTACTTGGCACCGGAAGTGATTTCCGGGGAGGGTCACGGTAACGGCGTTGATTGGTGGACACTGGGAGTATTCATTTTTGAACTGTTCTACGGGATGACACCGTTCAAAGGGGTTGAGCATGAGCTAACCCTAGCGAACATAGTGGCACGTGCCCTTGAGTTCCCTAAGGAGCCAATGATCCCAGGAGCAGCTAGGGATTTGATCTCACAACTGTTGGTGAAGGACTCAACAATGAGACTGGGTTCAACAATGGGTGCCCTAGCAATCAAGCACCACCCCTTCTTCAATGGAGTTAATTGGGCATTGTTAAGGTGTGCTACCCCTCCATACATCCCTGCATCAGACAAGTGCAAGGAATTGGTTCGACTCTATAATTGCACAACCAATACCATAGACTTCTATTAA 1419 0.5398 MPPPPSIVPLTKLNSLFPPTRTPLSVSLSLTHNTANSNSIIITVVIHRIISDTMHSSAEDDSDNPATTAGSEWTFSARNHAPSSDPCWEAIERGGGTLGLGDLRFVQRVGSGDIGSVYLVELKGSNGCLFAAKVMDKKELVARNKDTRAKVEREILQAVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHHAAVRFYASEVVVALEYLHMMGIIYRDLKPENVLIRSDGHVMLTDFDLSLKGDDTTSTAQIVFDQDPPSNSCSNDHSKNQCAPAMSSCMLPNCIVPSVPCFHPKRGRSKRSSRCGSVEIVAEPIEIRSTSFVGTHEYLAPEVISGEGHGNGVDWWTLGVFIFELFYGMTPFKGVEHELTLANIVARALEFPKEPMIPGAARDLISQLLVKDSTMRLGSTMGALAIKHHPFFNGVNWALLRCATPPYIPASDKCKELVRLYNCTTNTIDFY* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1938 472 Pfam Protein kinase domain 330 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1938 472 Pfam Protein kinase domain 105 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1938 472 PANTHER FLIPPASE KINASE 1-RELATED 45 472 - -
Vra8g1938 472 SUPERFAMILY Protein kinase-like (PK-like) 88 451 IPR011009 -
Vra8g1938 472 Gene3D Phosphorylase Kinase; domain 1 105 454 - -
Vra8g1938 472 PANTHER PROTEIN KINASE G11A-LIKE 45 472 - -
Vra8g1938 472 CDD STKc_phototropin_like 106 453 - -
Vra8g1938 472 Gene3D Transferase(Phosphotransferase) domain 1 188 451 - -
Vra8g1938 472 ProSiteProfiles Protein kinase domain profile. 103 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1938 472 SMART serkin_6 103 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1938 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1938 Vra-Chr8 36909678 36912754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1938 105 472 AGC Kinase Gene Family AT3G44610 64.230 3.37e-178 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra8g1938 Pkinase 4.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1938 K08286 - gmx:100786154 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1938 8 36909678 36912754 Vra8g1938 8 36909678 36912754 ECH