Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1932 ATGATTTCTTCTGGAATTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGGCTCATATGTGCTCGAATTCACTTGAATGCTGCAAGGAGATCCTTTCCTATTGTCTCCAGATCCAATCTCAGCATGATGGAGCGGGGTTCCCATGGTCTCGAACGGGTGACTGTAGCCAAATTTCCAACAAAGAAGTATAGTGACAAGTTTTTTGCTGCTGCAGAAAATTCTCAATGCACAGTTTGCCTTTCAGAATACCAAGGTGAGGATATGCTGCGTATTCTTCCTTTTTGTGGACACTCCTTCCATGTGACCTGCATAGACCTATGGCTGCAGCAGAATTCCACATGTCCTGTTTGTCGAATATCGTTGCGCGAGTTTCCAGATAGAAAGTGGTTAATGCAACCCTTGTTCAGCTCTGCTCTGCAACCTGGTATAGAATCCTTTGACACGCATCATTATCACTGTATGATGGACGATAATGGATTATCATCAAGAACCCCTGACAACCATGGGGTGAATCCTGTGGAAGAAGATCGTTTTCCATCTGAGGTTGGTGGAGCAGTTTCTATGGACAATATCACATGTTTAAGTGAGGTTGACTTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGAATTGA 684 0.4371 MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNAARRSFPIVSRSNLSMMERGSHGLERVTVAKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDMLRILPFCGHSFHVTCIDLWLQQNSTCPVCRISLREFPDRKWLMQPLFSSALQPGIESFDTHHYHCMMDDNGLSSRTPDNHGVNPVEEDRFPSEVGGAVSMDNITCLSEVDFIKDEGKKHVESPSNFQN* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1932 227 PANTHER OS11G0150450 PROTEIN 1 224 - -
Vra8g1932 227 SMART ring_2 87 128 IPR001841 -
Vra8g1932 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Vra8g1932 227 CDD RING-H2_PA-TM-RING 86 129 - -
Vra8g1932 227 Pfam Ring finger domain 86 129 IPR001841 -
Vra8g1932 227 SUPERFAMILY RING/U-box 81 135 - -
Vra8g1932 227 PANTHER OS11G0150450 PROTEIN 1 224 - -
Vra8g1932 227 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1932 Vra-Chr8 36843922 36847030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1932 45 136 C3H Transcription Factor Family AT4G10150 42.391 1.60e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1932 - - gmx:100794979 432.95