Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1930 ATGGGTGACCCATATGGGTTGCCGGAGGATCTCCGGCGTTTTATACCACCCAGAACCCATATGAACCCTTCAAGCACGCACCTGCTTGAGCCACTGTGTCTTCACCATGGTCTCAGTCCGGTTGCTGCTGCCACTACAATTCCACCCAACACCTATGACCACAACATGGTTGGGGACGTTTTCTTCCCTCGTGCCTTCACTCACTTTTCCCATCATCATGACTATTCCTCTTCTTCTGGTGTCAACCCTACCAATGCTGCCACTGCTGCTGTCTCGGATCATGCATTCTGCAGCATGGAGAGTGCAGAGAAAGGGTGGTTTGGTTTTGATTCCGGGAACAACAGGTGGCCAAGACAGGAGACCCTTTCGCTTCTAGAGATCAGATCTCGTCTTGATTGCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACGAAGGAAGGTAAAGCCAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTTGAAGCAATATGTGGAGACCAAGCAAACACAAATCATGCCTCAACTTCAGATAAAACCCATCGTGCTGGTGCAAACAATGGTAACATTCAAACACCTACCTTTGCAATTAACCAAGAACACAATGGGGATTCTAGTAATAACCCCAAGTGCTCAGAAAGCATCAGCATCTCAAACTCATCTGAGTTCGAGACATCCTCGTCTGAAAACAACGAGGAGGATCTTTCAGCCATTGCATTCATGATGAGGCAGTCAAGGGAGAAGCAGAAAGCGTTGTTGGATGAAAGACAAAGTGATCACAGGAGGTTAAGAAAAAGCTGGAGAGCAAAAGTGGAGGAGATTGTGGATTCCCACATGAGGAAGATCATAGAGACGCAAGATGCTTGGATGGAGAGAATGCTGAGCGTTGTTGAACAAAGAGAGCAAGAGATGTCATCCAAGGAGGAAGAAAGGAAGAGGAAAGAGTCAATGTGGTTTGACCAACAGGTGCATGAACNGTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACGTTGGGATAGAACTGGAAGCATTGCCCCTGGATGAAGCTATGGTTGAAGAAGCAGGAAATAAGAACAAGGGAGAAGGAAAGATTGAGAGCAGTGAATTTCCCTCGGAGGGTGTGGATCAAAGAAGTAGCAGTAGGTGGACAGAAATGGAGATTTCAAATTTGATACAGCTAAGGAGTGGTTTTGAGCAACGATTCAGAGAAAATGGGTACTTGGAGAATGGGCTTTGGGATGAAATATCAGCAAAACTGGGTTGTTTGGGATTTGATAGGAGTGGAAGTGAGTGCAAGCAAATATGGGATGAGATCAGCATCTCTCTGAGAAGGACAGTGGATGAGTGTGATGGTGGGAAAAGAAGGCCTTGGTATTTGGGACTTAGGGTGACGGATGATGATGATCTTTGA 1557 0.4554 MGDPYGLPEDLRRFIPPRTHMNPSSTHLLEPLCLHHGLSPVAAATTIPPNTYDHNMVGDVFFPRAFTHFSHHHDYSSSSGVNPTNAATAAVSDHAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANTNHASTSDKTHRAGANNGNIQTPTFAINQEHNGDSSNNPKCSESISISNSSEFETSSSENNEEDLSAIAFMMRQSREKQKALLDERQSDHRRLRKSWRAKVEEIVDSHMRKIIETQDAWMERMLSVVEQREQEMSSKEEERKRKESMWFDQQVHEXWAKEKAWVEARDAALIEVVRKHVGIELEALPLDEAMVEEAGNKNKGEGKIESSEFPSEGVDQRSSSRWTEMEISNLIQLRSGFEQRFRENGYLENGLWDEISAKLGCLGFDRSGSECKQIWDEISISLRRTVDECDGGKRRPWYLGLRVTDDDDL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1930 518 Pfam Myb/SANT-like DNA-binding domain 114 201 IPR044822 -
Vra8g1930 518 Pfam Myb/SANT-like DNA-binding domain 429 500 IPR044822 -
Vra8g1930 518 MobiDBLite consensus disorder prediction 206 278 - -
Vra8g1930 518 CDD GT1 114 180 - -
Vra8g1930 518 Gene3D - 431 493 - -
Vra8g1930 518 Gene3D - 116 178 - -
Vra8g1930 518 SMART sant 427 490 IPR001005 -
Vra8g1930 518 SMART sant 112 175 IPR001005 -
Vra8g1930 518 PANTHER - 32 502 - -
Vra8g1930 518 Coils Coil 327 354 - -
Vra8g1930 518 ProSiteProfiles Myb-like domain profile. 114 173 IPR001005 -
Vra8g1930 518 CDD GT1 429 494 - -
Vra8g1930 518 ProSiteProfiles Myb-like domain profile. 423 488 IPR001005 -
Vra8g1930 518 MobiDBLite consensus disorder prediction 206 271 - -
Vra8g1930 518 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 32 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1930 Vra-Chr8 36826594 36829398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1930 115 493 Trihelix Transcription Factor Family AT5G03680 43.147 9.97e-87 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra8g1930 Myb_DNA-bind_4 7.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1930 - - gmx:100787750 803.512