Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1924 ATGGATGTGCCGAAGCACCGTGCCACTCGAACAACCTCTCTCCGGGACGTCTCCGACTTCTCCAAGATGGAAGTAACTGGAAGCTGGGACGCCCTCGAATGGACCAAAATTGAGCCAATTACGCCCTTCGTCTCGAATGCGAATTTCGATTTCTTGATCGAGTCGGAGCAAGTTGTTGCCGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCTGGCACATTGATGGTAACAAATTTCCGTCTTATTTTTCTGAGTGAGGGTACTAGAAAAGTTATTTCCCTTGGAACGATTCCACTAGCAACCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATAATCGTTATGTAGACAAGACACCGGCTCAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGACCACGTACAAAACAGAGACGTTTGGTGTTTGATGCGCTACTGAGGTGTACAAAGCCAACAAGATTATGGGATCTTTATGCTTTTGCATCAGGACCTTCTAGGTTTAAGAACACTACTCCATTAGTCCGTTTACTAGATGAATATTGTCGGCTTCTTTGCCTAGGTTCTTATCATGCATCAATCGATATAATTGAAAATGGGTCGTTCACCTGGTCAAATGAACTATGGAGAATAAGTAGCGTGAATTCCAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGAAGAAGTGCTCCAGGCATCCAGCTTCCGTGCAAGAAGTCGACTGCCTGTAGTTTCATGGTGCCATCCATTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGTATTATGATGAACATGAGGAGCAACATGGATGAAAAACTTGTGGCCGGACTCTGTAGCAAGCTAGATAGTGGCTCAAGGAGAAAGTTATATATTGTTGATGCACGGCCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCCGAGGTAGTCTTCTTGGGGATAGACAACATCCATGCGATGAGAGACAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAGCGTCATCAGATGGAATGTCCTCTTTCTTGAGACAAGGTGGGTCAACGTGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACATTGGATGGTTACTGCATGTTCAGAATGTGTTGGCTGGAGCAGCTTGGATTGCTGCTCGTGTTGCAATTGAAAACTCTTCTGTTCTTGTGCATTGCAGTGATGGGTGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGATTGGCTTGCTTTTGGTCATCCATTTTCTGATCGGGTGGGAATGCCGTCAGTCTCTGGAACTGGCAACATGCCTTTTGAGTTATCTAGGCAGCCTTCAACTGGAAATTTTGCACCGTCACCTGTCCACCAGTCAGCAGGAACATTTTCATCACAACCTCCAGCTTCATCTCACTCACATAACAACAACAACTATTCTCCTATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTATTGCGGATGTATCCTTTTGCTTTTCAATTCTCTGCGGCTTTCCTGGTGGACTTCATAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGAAATGCAATGTTTTTGAGGCATGTGGATGTCTGTGGGTTTATTTAGCTGATTTACGGACATCGGAAGGAGGTTCCCATGTGCATTACAATCCCTTCTATGATCCACTCAAGCATAATGGTGCTCTTCTACCCCCAGCAGCAGCATTGGCGCCTACATTGTGGCCCCAATTTCACCTTCGTTGGGCATGCCCAGAAGAAGCACAAGCTGGGGAGATTGAAGCGCAGTGCAGGAAGATAGTTATGAAATGCTCTGAGATGCAGAAGGCTAAAGAAATGGCAGAAAGAAAAGTTAAAGAAGTTACAAATTCCATGGAGTCACTGAATGCTGAATTACGACGTGAGAAGCAGATAAACAGCTCAGCTATGAACATGGCAAAGAGTGTGAGCAAAGAAAATATGGCTATAAAGCGTGCAATTCAATCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTGGTGAATGCACTGTTGACATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCAAGAAAAGAAACAAATAGTAATGTGCGTGATGACAAAACGGACCCTCCTATTTCAGTACAAGTTACAGCAGATGATGATGATGGAAACAGTGGGATTGTTCGGGTATGTGAAACTCTATGCCCATTTGGCTCTGGAGGTGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTATGTTGGCCTCAAGGCAAACTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCTGAGTGA 2544 0.4395 MDVPKHRATRTTSLRDVSDFSKMEVTGSWDALEWTKIEPITPFVSNANFDFLIESEQVVAEGHGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVISLGTIPLATIEKFNKIVVKVQSNNRYVDKTPAQRLLQVIGKDMRILVFSFRPRTKQRRLVFDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYCRLLCLGSYHASIDIIENGSFTWSNELWRISSVNSSYTMCQSYPFALVVPKIISDEEVLQASSFRARSRLPVVSWCHPLTGAVVARSSQPLVGIMMNMRSNMDEKLVAGLCSKLDSGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRDSFVRLREYMDTHGRASSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDIGWLLHVQNVLAGAAWIAARVAIENSSVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSVSGTGNMPFELSRQPSTGNFAPSPVHQSAGTFSSQPPASSHSHNNNNYSPIFLQWVDCVSQLLRMYPFAFQFSAAFLVDFIDCMLSCRFGNFLCNSEKERQKCNVFEACGCLWVYLADLRTSEGGSHVHYNPFYDPLKHNGALLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKIVMKCSEMQKAKEMAERKVKEVTNSMESLNAELRREKQINSSAMNMAKSVSKENMAIKRAIQSMGCKVHVSGSGECTVDIESNPDILCCSSRKETNSNVRDDKTDPPISVQVTADDDDGNSGIVRVCETLCPFGSGGGGCRWPNGGCAQLGSQYVGLKANFDAFDQLSINDSYFKSE* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1924 847 Coils Coil 675 709 - -
Vra8g1924 847 SUPERFAMILY PH domain-like 52 174 - -
Vra8g1924 847 CDD PTP-MTM-like 262 552 - -
Vra8g1924 847 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Vra8g1924 847 ProSiteProfiles Myotubularin phosphatase domain. 202 650 IPR010569 -
Vra8g1924 847 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 654 IPR029021 -
Vra8g1924 847 Pfam Myotubularin-like phosphatase domain 171 592 IPR010569 -
Vra8g1924 847 Gene3D - 63 162 IPR011993 -
Vra8g1924 847 PANTHER MYOTUBULARIN-RELATED 19 846 IPR030564 -
Vra8g1924 847 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 846 - -
Vra8g1924 847 SMART gram2001c 42 111 IPR004182 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1924 1 845 Protein tyrosine phosphatase (PTP) family AT3G10550 65.962 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1924 K18081 - gmx:100781842 1522.29