Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1917 ATGTTGGAAATGGAGAAGGATTTTGATTCGAAGCTGAAGATTCAGGGGAATACCTCATCTTCCAATGGTGGAGGCAATGTCCAGAGATCCAAGAGCTTTGCTTTTAGGGCTCCTCAGGAGAATTACACTATCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCCAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAACTGTCTATGCATTGAAGATCATGGATAAAAAGTTTATTACTAAGGAGAACAAAACAGCTTATGTGAAATTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGGTTATATTTCACATTTCAAGATTCATTTTCTCTATACATGGCACTTGAATCCTGCGAAGGTGGAGAACTTTTTGATCAAATAACCAGGAAAGGTCGTCTAACTGAGGATGAGGCACGGTTCTATGCAGCTGAAGTTGTTGATGCTCTTGAATACATACATAGTTTGGGAGTCATACACCGTGATATTAAGCCAGAGAACTTGTTACTCACAGCTGACGGACACATTAAAATAGCGGATTTTGGGAGTGTGAAGCCTATGCAGGATAGTCAAATCACTGTCCTTCCAAATGCAGCGTCTGACGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCTGCAACTTTTGGCAATGACCTATGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCATTTAAAGACGCAAGTGAATGGCTTATTTTTCAAAGAATTGTAGCAAGGGAACTTAGATTTCCAGATTACTTTTCTGATGAAGCAAGAGAGCTCATTGACCGTCTGTTGGATTTGGAACCCAGCAGGAGACCAGGTGCTGGACCTGATGGTTATGCTATTTTGAAAGCACACCCATTTTTCAAGGGGGTTGACTGGAAGAACTTGAGGGCACAAGTTCCTCCAAAACTTGCTCCGGAACCTGGGACTCAGTCACCTGCAGCTGATGATGTTCATGATTCGTCATGGAGTCCTTCTCACATTGGGGATTGTCACTCAGCTTCAGTTAGACAACCTGATGGTGCTACATCTTCTGATGGGTCTAGTCACATAACTAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAGTTTTTGGATCCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTCACCAACAAACCAAAGTTGATCTATGTGGACCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATCTAAGCATCCAAGTGACTACTGCATCAAACTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAAGATGCTAAGCAAAGAGCATGGCAGTGGAAGAAGGCAATTGAAGGACTTCAAAACCGGTGA 1476 0.4234 MLEMEKDFDSKLKIQGNTSSSNGGGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLTEDEARFYAAEVVDALEYIHSLGVIHRDIKPENLLLTADGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIVARELRFPDYFSDEARELIDRLLDLEPSRRPGAGPDGYAILKAHPFFKGVDWKNLRAQVPPKLAPEPGTQSPAADDVHDSSWSPSHIGDCHSASVRQPDGATSSDGSSHITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTTASNFKICTPKKVMSFEDAKQRAWQWKKAIEGLQNR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1917 491 MobiDBLite consensus disorder prediction 13 27 - -
Vra8g1917 491 Pfam Protein kinase domain 49 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1917 491 Gene3D Phosphorylase Kinase; domain 1 45 130 - -
Vra8g1917 491 SUPERFAMILY Protein kinase-like (PK-like) 44 365 IPR011009 -
Vra8g1917 491 Gene3D - 360 491 IPR011993 -
Vra8g1917 491 SUPERFAMILY PH domain-like 308 490 - -
Vra8g1917 491 Pfam PH domain 388 490 IPR033931 -
Vra8g1917 491 MobiDBLite consensus disorder prediction 1 27 - -
Vra8g1917 491 SMART serkin_6 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1917 491 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1917 491 Gene3D Transferase(Phosphotransferase) domain 1 131 333 - -
Vra8g1917 491 MobiDBLite consensus disorder prediction 352 375 - -
Vra8g1917 491 Coils Coil 471 491 - -
Vra8g1917 491 CDD STKc_PDK1 45 314 IPR039046 GO:0004674
Vra8g1917 491 MobiDBLite consensus disorder prediction 327 375 - -
Vra8g1917 491 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 21 487 - -
Vra8g1917 491 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 487 - -
Vra8g1917 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1917 Vra-Chr8 36609275 36619903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1917 1 491 AGC Kinase Gene Family AT3G10540 81.504 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Vra8g1917 Pkinase 8.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1917 K06276 - gmx:100788780 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1917 8 36609275 36619903 Vra8g1917 8 36609275 36619903 ECH