Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1915 ATGGGGAAGACCGAAGAGAACGATGCTCTTACAAAGAACAAACCTCCCACTGAAAAGGATATTTTAGCCGAGCTTGAGTTGAAAATGAAAAAGTATCTGAGAGGAGAAAGTGCTAATTTGGAGGTTCTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTGTTAAAGAGCAGTTATATGGAAAATCTGCACAAGCTGCTGCCAAGGCCGAGAAGTGGCTTATGCCTAGTGAAGGAGGTTATCTGGAGGCTGAAGGCTTGGAAAAGACATGGAGGATCAGACAGGAGACAATAGCTCATGAAGTAGATATCTCAAGCTCACGGAAACAGTATGATATTATTTTGCCAGAACTTGGTCCATACACTCTGGATTTTACTTCAAGTGGCCGGTATATGGCTGTGGGTGGTCGTAAGGGCCATCTGGGAATAGTGGACATGATAAATCTGAGCCTAATTAGAGAGCTTCAGGTAAGGGAAACAGTGCGTGATGTGGTATTCTTGCACAATGAGCTCTTTTTCGCTGCTGCACAGAAAAAGTATCCATACATCTATAATCGAGAAGGCACTGAGCTTCACTGCCTTAAGGAACATGGTCCGGTGTTGAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCTACACTCAATAAGTTTGGGCAGCTTCGCTATCAGGATGTTACAATGGGTTCAATGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAGATGTGATGCAAGTAAACCCCTTCAATGGAGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCGACCAGTTCTGCTCCTCTTGTCAAGATGCTATGTCATCAGGGGCCTGTTTCAGCGCTGGCATTTCACTCAAATGGCCACATGATGGCCACTGCAGGGAAAGATAAAAAAATCAAGCTTTGGGACTTAAGGAAATTTGAGGTTCTTCAAACCTTACCTGGTCATGCAAATACTCTGGATTTTAGTCAGAAGGGTTTACTTGCTTGCGGTAATGGCTCATTGATCCAGGTTCTGCGAGATGTTTCTGGTACACAAAATTATTCCAGGTACATGACTCATTCCATGGTGAAAGGTTACCAGGTAGGAAAATTATTATTTCGACCATATGAAGACGTTTTAGGTATAGGGCATTCCACGGGTTGGTCTAGTATTCTTATTCCAGGAGCTGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTCGAAACTTCCAAACAGAGAAGAGAAAAGGAAATACGGGCTCTACTTGATAAGCTCCCCCCCGAGACTATCATGTTGGATCCCAGCAAGATTGGAACGGTGAAACCAAAAAGAGAGAAGCCAACAAAGCAAGAGAGGGAGGCTGAGGTGGAAGCTGCTGTTGAAGCTGCTAAGGGCATGAAACTGAAGAAGAAAACAAAAGGAAGAAACAAGCCAGGTAAAAGGATACAGAAAAAACAAGAGGCAGTTAGTAGAGTGAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAACATGTCAAGAAAGAAGCAGAAAACTAGTGAGGGTGTTGAACTACCAAAATCTTTACAACGGTTTGCTCGTAAAAAAGCAACATCGTGA 1608 0.4353 MGKTEENDALTKNKPPTEKDILAELELKMKKYLRGESANLEVLKDKKLKGQLAVKEQLYGKSAQAAAKAEKWLMPSEGGYLEAEGLEKTWRIRQETIAHEVDISSSRKQYDIILPELGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLSLIRELQVRETVRDVVFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATLNKFGQLRYQDVTMGSMVGNFRTGLGRTDVMQVNPFNGVVSLGHSGGTVTMWKPTSSAPLVKMLCHQGPVSALAFHSNGHMMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSRYMTHSMVKGYQVGKLLFRPYEDVLGIGHSTGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRALLDKLPPETIMLDPSKIGTVKPKREKPTKQEREAEVEAAVEAAKGMKLKKKTKGRNKPGKRIQKKQEAVSRVKRPYLEQKIQEEENMSRKKQKTSEGVELPKSLQRFARKKATS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1915 535 SUPERFAMILY WD40 repeat-like 114 384 IPR036322 GO:0005515
Vra8g1915 535 MobiDBLite consensus disorder prediction 439 468 - -
Vra8g1915 535 Gene3D - 88 241 IPR015943 GO:0005515
Vra8g1915 535 SMART BING4CT_2 355 435 IPR012952 -
Vra8g1915 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Vra8g1915 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Vra8g1915 535 SMART WD40_4 105 144 IPR001680 GO:0005515
Vra8g1915 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Vra8g1915 535 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Vra8g1915 535 MobiDBLite consensus disorder prediction 482 518 - -
Vra8g1915 535 PANTHER WD-REPEAT PROTEIN BING4 10 531 IPR040315 -
Vra8g1915 535 PANTHER BNAANNG36350D PROTEIN 10 531 - -
Vra8g1915 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Vra8g1915 535 MobiDBLite consensus disorder prediction 434 535 - -
Vra8g1915 535 Gene3D - 242 360 IPR015943 GO:0005515
Vra8g1915 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Vra8g1915 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Vra8g1915 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1915 118 331 U-box Gene Family AT2G33340 25.664 2.44e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1915 K14768 - gmx:100786818 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1915 8 36594658 36601656 Vra8g1915 8 36594658 36601656 ECH