Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1913 ATGAATTGTCTTCACAATCTTTCGCGATTCTCTCTTTTGCCCTTCGAAACGGTTGCCACGCGCCACCGCAACAATCTTCCCCTTTCACTGAGAATCGTCAATAATTCTCATCGTAATCGAAGTATGGCGCTCAAGGCTGCTTCAGGTTCCGTACCAAGTGCAGACAAAAGTAATGTCAACAAGGAGGAGGAAAAGTCTGAGATATATTCTAATAACATGACCGAAGCCATGGGTGCTGTTTTGACTTATAGGCACGAGTTAGGAATGAACTATAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCCCACAGACTCCTGATGATGTTGAGAAGTTGCGTAGAATTGGAGTGAAAACAATATTTTGCTTACAACAAAATCCAGACCTTGAATATTTTGGAGTTGATATTAAGGCCATACAAGAATATGCCAAGGCACATGATGTTCAACACTTGCGAGCTGAGATAAGGGACTTTGATGCATTTGATCTACGGATGCGGCTTCCAGCTGTAGTTAGCAAATTGTATAAGGCAATAAATTCCAACGGAGGCGTGACATATATTCATTGTACTGCTGGACTTGGAAGAGCTCCTGCCGTTGCAACGGCCTACATGTTTTGGGTTCTCGGTTATACATTCAAAGAGGCTCATACACTACTTCAGAGCAAAAGGGAGTGTTTTCCCAAACTAGATGCCATTAAAAGTGCAACGGCTGACATCCTTACAGGCCTTAGTAAGAAACCTGTCACTTTGTCATGGGAAGACAGCAGTTGCTCTAGGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAGTACCCCTAGATTTTGATGACAAATCGGGTTTGTGGTATCTCGAGAGGGAATTACCTGAAGGACGCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACTGCTCCCAACAAAGATGGCCATGTCAACAATTTCATTCAAGTCCTTGATAATAGCAGCAGTGGTCGTGTTTCCCTTCGGGAGAGATTCAGTTCTGATGATCCTGATCTTACACCGGAGGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGACGAGGATCTGTGA 1116 0.4355 MNCLHNLSRFSLLPFETVATRHRNNLPLSLRIVNNSHRNRSMALKAASGSVPSADKSNVNKEEEKSEIYSNNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCPQTPDDVEKLRRIGVKTIFCLQQNPDLEYFGVDIKAIQEYAKAHDVQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVATAYMFWVLGYTFKEAHTLLQSKRECFPKLDAIKSATADILTGLSKKPVTLSWEDSSCSRVEISGLDIGWGQRVPLDFDDKSGLWYLERELPEGRYEYKYIVDGEWTCNKDELVTAPNKDGHVNNFIQVLDNSSSGRVSLRERFSSDDPDLTPEERLRIKEFLEACPDEDL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1913 371 CDD E_set_AMPKbeta_like_N 248 329 - -
Vra8g1913 371 Pfam Dual specificity phosphatase, catalytic domain 143 227 IPR000340 GO:0008138|GO:0016311
Vra8g1913 371 MobiDBLite consensus disorder prediction 43 66 - -
Vra8g1913 371 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 166 224 IPR000387 GO:0016311|GO:0016791
Vra8g1913 371 Gene3D Immunoglobulins 244 334 IPR013783 -
Vra8g1913 371 Gene3D Protein tyrosine phosphatase superfamily 83 362 IPR029021 -
Vra8g1913 371 ProSiteProfiles Dual specificity protein phosphatase domain profile. 90 246 IPR020422 GO:0006470|GO:0008138
Vra8g1913 371 SUPERFAMILY E set domains 247 330 IPR014756 -
Vra8g1913 371 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 369 - -
Vra8g1913 371 CDD DSP_laforin-like 89 235 IPR045204 GO:0019203|GO:0046838
Vra8g1913 371 Pfam Glycogen recognition site of AMP-activated protein kinase 248 332 IPR032640 -
Vra8g1913 371 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 369 IPR030079 GO:0005982|GO:0007623|GO:0019203
Vra8g1913 371 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 230 IPR029021 -
Vra8g1913 371 SMART dsp_5 90 239 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1913 Vra-Chr8 36573381 36581359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1913 89 371 Protein tyrosine phosphatase (PTP) family AT3G52180 68.310 2.65e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1913 - - pvu:PHAVU_007G145000g 644.81