Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1910 ATGACAGATTTTCAGCCGCTACAGCAGAAACCCGAGCCTGCTGATTCCCATTCCGAGTTTGAGAGGGGACTGGAGGAGTTTATGCGCGGCCACTTGGATGAGTGTATGTCGTTTGCTTCATGTAGCTCATCCCGCGCACCTGATGATGAGGATGACGAGAGCGATCAGCTGGTTCGGAGGAGACGGAGGTCTGACCTTGAAGGGGATGATTTAGCAGAGTCGTCGGCTGCACGCCGGCGGCATTCAAGAATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAAATGATAACCACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGTTTGCATACAGTCTCGATGCTGGATTCTTCTTTCCTGAGGGGCTCACAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCGTCTGCCATTTTGCAGATGTGGCGCGAATTGGAAGATGAACATTTGTTGAACCGGGCACGGGAAAGGATGAGGGTAAGGTTACGGCAACAGAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCAGATAGTCGAGGCAGTGAGAATCATGGGAGTTTGGGAGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGGTCGAGGAATGCACATGGGGATCATAACGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGGGTTAGACAGATAGTTCGGGGGTGGATGGAAAGTGGCATTAGTGATCATTCCTCCAATGTGAGTCAGCGAAACAATAACCGCAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCGCGTGGGAGCCGTAGGGATTCTCAAGTAAGTGAAGGTGCTCAAGCTGATCCAGTCCGTGATGTAGCTGACAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGATATGTTGAGGTTGCGCGGAAGACAGGCTCTAGTTGATTTGCTAGTGCGGATAGAAAGGGAAAGACAAAGAGAGCTACAGGGATTGCTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAACCGAATTCAGTCACTGCTTAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCACCATCTATGGCCGCTAGTGAATTAGTTCAGCTAAGACAACGGCACACAGTCTCTGGTTTAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTCCGTGGTCAAGCAGGCACAAATCCTGATACCACATCAAATAGTAATGCCACTGAAACAAGAGGGGATGAAAACCAAGCAAACAGTATGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAACCTGGAAACTGATGTGCGTCAGTTGCCTAATGGAACAGGAACTATGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAACTGGTAACCAAGGAGGGAATTGGCAGGAACAGATTGCTGAGGAAGGGGGAGGAAGTTGGCAACATAGTCCATTCAATCAGACGAGAGATGGAAGGGCAGTCAATGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAGGATCCTCATCCACGGGAAGCTCAAAGAATTTGGCATGAAGATAATACTAGGGAAACTGCTGGTAATTGGTCTGATGGACCTTCTGGAGTTTCGAGGAATCACCGTGGGGTTCCTGTTAGAAGATTCAACAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTACGCAGTGGTTTCCGGGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGGGCACCAATTGACTGGGATTTGCATCGGAATTTGCCTACACCAACTCCTGCTTCACCTGAACGGGACCCAGATCAGCAGACTGGTGAACGAGCTGAGGGTCAGCATGAAACAATTAACAGACCTTCACTGGTGTTGCCATCTCCACCTGTGCCTCCGCCACAACCTCTGTGGCACCAGGATTTACATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGTATGAATCACATGCAGAGGATGTTGGAGGCGTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGGCAGGAAGTATCTGCAGCTCTGAACCGCTCAGCCGGTGAAAACGGATTGGGTGCTGAGACATCTGATGATGGGTCTAGATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGATGCGGGCACATGTGTACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2547 0.4845 MTDFQPLQQKPEPADSHSEFERGLEEFMRGHLDECMSFASCSSSRAPDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRQQRNSDSNTNVSSTMSDSRGSENHGSLGDASESENDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVSEGAQADPVRDVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGTNPDTTSNSNATETRGDENQANSMVDGQQENYEQQQIRNLETDVRQLPNGTGTMESSTSESISWQETGNQGGNWQEQIAEEGGGSWQHSPFNQTRDGRAVNDWPQEPPRNLAGEDPHPREAQRIWHEDNTRETAGNWSDGPSGVSRNHRGVPVRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQTGERAEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSRWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1910 848 MobiDBLite consensus disorder prediction 431 460 - -
Vra8g1910 848 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 848 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 52 78 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 40 78 - -
Vra8g1910 848 Coils Coil 725 745 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 173 244 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 177 221 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 296 313 - -
Vra8g1910 848 CDD mRING-HC-C3HC5_NEU1 795 835 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 1 24 - -
Vra8g1910 848 Pfam Zinc finger, C3HC4 type (RING finger) 793 840 - -
Vra8g1910 848 ProSiteProfiles Zinc finger RING-type profile. 796 835 IPR001841 -
Vra8g1910 848 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 848 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 484 537 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 296 334 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 550 571 - -
Vra8g1910 848 SUPERFAMILY RING/U-box 795 841 - -
Vra8g1910 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 846 IPR013083 -
Vra8g1910 848 MobiDBLite consensus disorder prediction 222 244 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 484 587 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 649 689 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 125 146 - -
Vra8g1910 848 MobiDBLite consensus disorder prediction 433 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1910 Vra-Chr8 36535328 36541832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1910 796 842 C3H Transcription Factor Family AT3G06140 42.553 1.42e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1910 - - gmx:100805607 1527.69