Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1890 ATGTCAGCAGAGGAAATCTTGTCATCCAACGAAGAACAATATGATATATCTCAGCCTCCATTTGGTAACACAAGTGGCTATAATTCTAGGATAGGCATCTACCACTCTCTAGTTAAGCTTCAAACTAAGCATGAAATCCCAACAAAGCCAGACCTCAACACTGCCCATTTTGTGCTGTCACAGTTCCCACAAGCACACCTTGCTGTGGCAAAAACTGCATTCATTGATGCAAGAACAAATCTGAGAGTTAGCTATAGTGAGCTGAGAAGGTCTGCCTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGGAAAGGTGATGTGGTTTTTTTATTGTCACCAAACTCAACCTTGTACTCGGCCATATGTCTAGCTGTGTTGTCCGTTGGAGCAGTTCTGTCCACTGCCAACCCCATCAACACAGCATCAGAAATTGCGAAACAAGTGCGTGATTCGGGTGCTAAACTAGCCATCTCAACACCAGAGGAGCTGCACAAATTGGTCCCAACTGGGGTTCCTACAATTCTCACTTCTCGTTCTTCTGATGGCAGAATGTTATCCGTTGAAGAGTTAATAGAAGGTTGTTATGATTCAACCGAGTTGCCGCAAGTTCCTGTGGCACAGTCAGACACTGCTGCTATATTTTACTCTTCAGGGACCACGGGAATAAGCAAAGGTGTGGTTTTAACTCATGCAAATCTCATTTCCATAATGAGATTGATTCTCTGGTCTGCTGATGTCAGTGGATCCCAAGATGATATTTTCTTGGCCTTCATTCCAATGTTTCACATCTATGGATTTGTATTCTTTGGATTAGGATTGTTGTGTGTTGGTATAACAACAGTTTTGATGCAGAAGTTTGACTTCCAAGATATGCTTGATGCAATCCAGAAGCACAAGGTTAACAACGTGCCAGCAGTGCCACCAGTGATCCTTGCGCTAGTGAAGCATTCAAGGAAAGCTAGTTGTGACTTGTCCAGCCTAAGAAGAATGGGGACAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACTGGAGTTCAGGAAAATGTTTCCATGGGTTGAACTAAGGCAAGGTTATGGACTAACAGAAAGTAGTGGTGGAGCAACATTTTTTGTCTCAGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGCTGATTCCAACATTTTCTGCAAAAGTTATAGACACTGAAACGGGGAAGCCTTTGCCCCCTAACAAAGAAGGAGAGTTGTGGTTAAAAAGTCCTACCATTATGAAAGAATATCTGGGAAATTTGGAGGCAACAAGTTCAACAATTGATTCAGAAGGTTGGTTGAGAACTGGTGATCTTAGTTACATTGATGATAATGGATTTGTTCACATAGTTGAACGGATAAAAGAGCTAATCAAGCACAACGGGTATCAGGTGGCTCCTGCAGAACTGGAGTCTGTGCTGCTAAGTCACCCTCTTATAGCTGATGCAGCAGTTATACCGTTGGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGACCAAATCATTCAATTTGTAGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCACAAAGCAAATTTCAACCTGTCTCCAAGCTATGA 1713 0.4308 MSAEEILSSNEEQYDISQPPFGNTSGYNSRIGIYHSLVKLQTKHEIPTKPDLNTAHFVLSQFPQAHLAVAKTAFIDARTNLRVSYSELRRSAYSLASALFHGLEVRKGDVVFLLSPNSTLYSAICLAVLSVGAVLSTANPINTASEIAKQVRDSGAKLAISTPEELHKLVPTGVPTILTSRSSDGRMLSVEELIEGCYDSTELPQVPVAQSDTAAIFYSSGTTGISKGVVLTHANLISIMRLILWSADVSGSQDDIFLAFIPMFHIYGFVFFGLGLLCVGITTVLMQKFDFQDMLDAIQKHKVNNVPAVPPVILALVKHSRKASCDLSSLRRMGTGAAPLSKEVALEFRKMFPWVELRQGYGLTESSGGATFFVSDKDAKAHPDSCGKLIPTFSAKVIDTETGKPLPPNKEGELWLKSPTIMKEYLGNLEATSSTIDSEGWLRTGDLSYIDDNGFVHIVERIKELIKHNGYQVAPAELESVLLSHPLIADAAVIPLEDEETGQIPMAYVVRAAGSELSEDQIIQFVAGQVAPYKKVRKVSFIDTIPKSAAGKILRKDLVSQSKFQPVSKL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1890 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Vra8g1890 570 CDD 4CL 46 558 - -
Vra8g1890 570 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g1890 570 Gene3D - 464 565 IPR045851 -
Vra8g1890 570 SUPERFAMILY Acetyl-CoA synthetase-like 70 560 - -
Vra8g1890 570 Pfam AMP-binding enzyme 70 467 IPR000873 -
Vra8g1890 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Vra8g1890 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 569 - -
Vra8g1890 570 Gene3D - 40 463 IPR042099 -
Vra8g1890 570 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 19 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1890 Vra-Chr8 36241545 36244719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1890 70 559 Monolignol Biosynthesis Gene Families AT1G20500 46.693 1.10e-153 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1890 K10526 - gmx:100783104 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1890 8 36241545 36244719 Vra8g1890 8 36241545 36244719 ECH