Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1888 ATGGCACCTATGGGTCCCGGCTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATCACCGGAAACCTCTCCCGGTACGACCACATCGCAGTGGTTGATGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCCAAGCTCAAGACCAAGGACTTGGAATGGTACTTCTTCAGCGTGCTGGACCGCAAGTATGGGAATGGCTCCAGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACTGGAAAGGACCGCCCTGTGGCCCATGGTGACCGCACCGTGGGGATGAAGAAGACCCTCGTGTACCACATCGGTCGAGCCCCACATGGCCGTCGCACCAATTGGGTCATGCACGAGTACAAGATGCTCGATGAAGAATTGACTCGTGCTGGCACAGTGCTGGATGTGTATGTGGTATGTAGGATTTTCGAGAAGAGTGGTGCTGGACCAAAGAATGGGGCCAAGTATGGTGCTCCCTTGGACGAGAAGGAGTGGGATGTGGATGAGGAGAATGAGCAGAAGGAGGTGGTTCCCGTGCCTGCGACTGCTCATCGTGTGGTGGCTCCCTTGACGGAGATTAGTCCTAACGTGGTTGCTCCTCCTTTGCCCGCGACAGCTGCAGTGGCTCCTCCTGTGGTAGCAACTGGTGGTGACTTTTGGGATGATATTGGGGCCTTTTTGGAAACTAACGACCTTGACGGGGAACTTGATTTGACTGATATGATTGGGGGTGTTACTTTTCCATCATTGAACTTTCATCACGGGGAGTGTAGTACCTATGCTGAAAATTCCCAAGAACTCATCAAGGATCAGGAGCCATTGGCGGGCACCTTTGGAATTTCTGGGCCTGAAAATGGCCAGCCTCTTGATATGGCTGAGCAACTTGACATGGGCACAGGTTCAGTGAAAGATGAAGAGAATGGTGAGCAGAGCGAAATTGTGAATCTTCTCAATTTCAATGACGCATCGGATAATATGGATCTGGATCTATATTTTGATGCCACCCAGAATCTTCCAATGGCTGATGATGAATCATTCTTGGAAACCAATGATCTTGCAATTGGGAATGAGGGTGATCTCATTGAGGCTGATCCTTATGCCAATGATATTATGCTAGACAAGTATCTTGCACTCCCTGATGATGATGATGATATTTGCAAATATATATCTTTCGATTATTCTCAGGTTCCAGAGAGTGAAAACTCTAATTCCAACCAAGGATCACCTTTAACCCAGCAGACTGTGGGGGGAGAAACCTCAAATAAAGCTGTGGTTGGTAAACATGATTCTGAAGCTCAAACCAGCAATGAGGCTTTTTCTGTGCAGAATACAGAGGAGGCAAAGTTAGCAGCACCAGGAAATACAAATCCATTTGTTAAGCAGGCCTATGGATGGTTAGCTAGCATCCCTGCTTCACCTGCACATGCTTTCGAGTTTCCAGCAAAGGACATTACTCTTGGGGTTGATGGTGCAGCTCAGTCTTCCCATCCAGCTCATATAACTACAGGTATGATCAGCATAACAGACATTACTTTTAGAGGCAATGCGATGGATTGGCCCATGGGCAAAATTGGAGGATTTAACACTGCAATGTCTACTGAGTTTTCTCGACCGGACGTTAATTGTGCTGCCTTGATACCTGTTTCTGGCAAGACCGCATTTGTATTGTCACATGGCTGGATATTTTTGACGGGTTTCTCGGTTCTTATTCTTTCACTTAGTTTCAAGATTGGAAGCATCATGTATACTGGTAAGTAA 1785 0.4835 MAPMGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVAHGDRTVGMKKTLVYHIGRAPHGRRTNWVMHEYKMLDEELTRAGTVLDVYVVCRIFEKSGAGPKNGAKYGAPLDEKEWDVDEENEQKEVVPVPATAHRVVAPLTEISPNVVAPPLPATAAVAPPVVATGGDFWDDIGAFLETNDLDGELDLTDMIGGVTFPSLNFHHGECSTYAENSQELIKDQEPLAGTFGISGPENGQPLDMAEQLDMGTGSVKDEENGEQSEIVNLLNFNDASDNMDLDLYFDATQNLPMADDESFLETNDLAIGNEGDLIEADPYANDIMLDKYLALPDDDDDICKYISFDYSQVPESENSNSNQGSPLTQQTVGGETSNKAVVGKHDSEAQTSNEAFSVQNTEEAKLAAPGNTNPFVKQAYGWLASIPASPAHAFEFPAKDITLGVDGAAQSSHPAHITTGMISITDITFRGNAMDWPMGKIGGFNTAMSTEFSRPDVNCAALIPVSGKTAFVLSHGWIFLTGFSVLILSLSFKIGSIMYTGK* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1888 594 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Vra8g1888 594 MobiDBLite consensus disorder prediction 405 429 - -
Vra8g1888 594 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vra8g1888 594 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 4 187 - -
Vra8g1888 594 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 335 589 - -
Vra8g1888 594 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Vra8g1888 594 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 187 - -
Vra8g1888 594 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 335 589 - -
Vra8g1888 594 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1888 Vra-Chr8 36222886 36226392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1888 4 590 NAC Transcription Factor Family AT5G04410 35.784 2.28e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra8g1888 NAM 6.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1888 - - vun:114191703 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1888 8 36222886 36226392 Vra8g1888 8 36222886 36226392 ECH