Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1887 ATGGGTCGCGAAACTGTGTTTCTTCCAGCCCCACCAACCACTACCACCACTATAGTGAATCCAGTGGCAGCACCAACTGCACCACCTACCTCTCTTGCTCCTGGTTTCAGGTTTCACCCAACTGACGAGGAACTTGTTATCTATTACCTCAAGCGCAAGGTTTCTGGTAAAAGCTTCCGATTTGATGCTATATCTGAAGTGGACATATACAGGAGCGAGCCCTGGGACCTAGCAGATAAATCAAGGTTGAAGACAAGGGACCAGGAGTGGTATTTCTTTAGTGCATTGGACAAGAAATATGGAAATGGTGGGAGGATGAACAGGGCTACCAACAAAGGGTATTGGAAAGCCACTGGGAATGATCGGCCAGTGAAGCATGATCAAAGGACTGTGGGGTTGAAGAAAACTTTGGTGTTTCACAGTGGCCGAGCTCCTGATGGGAAGAGAACTAATTGGGTCATGCATGAGTACAGGCTTGTTGATGAGGAGTTAGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCGTATGTTTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGATATGCACCCTTTGTTGAAGAAGAGTGGGATGATGCATCTGGAATGGTTCCAGGGGCAGAGCCTGTGCATAATGGCTCTATCGCCCATCAGCCACGTGTTGAAGGCAACAATGGTGTTTTATGTGCTGAAGGGAGAAATGGTGTTCTACAGGACACTCAATCTATCAATAAAACTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTTTGCAAGAGAGAAAGCATGGCTGAGTATCCATCTCCTGAAAAGGATGATAATAATTGTAAGCAAGTGGATGAGTACCCTTCACCCCAAACAGACAATCCAAAGCCTTTCTCTCTAATATACAAAAGAAGGCGGCATAACTTGAACTCCAACCACTCTAATGTTTCGGGGGATTCAATCCGAACCGGTCAGGATCCATGCTCCTCTACAATAACTACTGCAGCAACAACACTCCCAACCACCACTGCTGGTGCTGACACCACCAACTCTGCACCAAAAAAGCATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCAAGAGTCCCTTGAATCTAAGGAAAGTCTTGCTTTGATCAAGGCACCAGATTTTGACGCCGAAAACCTTGAGTCATCCATGTCTCCAAGCTCTGCCAAGTTCATCAAGAACTTGCAGAATGAGATCCATAAGCTTGCAGTCGAAAAGGAGACAATGAGGTTTGAGATGATGAGTGCTCAAGCGATGATTAACATTCTCCAGTCTCGTGTTGACGTTCTCAGCAAAGAAAATGAGGATTTGAAGAGAATGACCCAAAATCCTTAA 1389 0.4557 MGRETVFLPAPPTTTTTIVNPVAAPTAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVKHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGMVPGAEPVHNGSIAHQPRVEGNNGVLCAEGRNGVLQDTQSINKTPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKQVDEYPSPQTDNPKPFSLIYKRRRHNLNSNHSNVSGDSIRTGQDPCSSTITTAATTLPTTTAGADTTNSAPKKHFLSALVEFSLQESLESKESLALIKAPDFDAENLESSMSPSSAKFIKNLQNEIHKLAVEKETMRFEMMSAQAMINILQSRVDVLSKENEDLKRMTQNP* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1887 462 Gene3D NAC domain 41 189 IPR036093 GO:0003677|GO:0006355
Vra8g1887 462 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 24 460 - -
Vra8g1887 462 SUPERFAMILY NAC domain 27 187 IPR036093 GO:0003677|GO:0006355
Vra8g1887 462 MobiDBLite consensus disorder prediction 279 307 - -
Vra8g1887 462 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 24 460 - -
Vra8g1887 462 Pfam No apical meristem (NAM) protein 34 159 IPR003441 GO:0003677|GO:0006355
Vra8g1887 462 Coils Coil 438 458 - -
Vra8g1887 462 Coils Coil 410 430 - -
Vra8g1887 462 ProSiteProfiles NAC domain profile. 32 186 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1887 Vra-Chr8 36209438 36219771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1887 1 457 NAC Transcription Factor Family AT3G10480 43.327 1.10e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra8g1887 NAM 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1887 - - gmx:100808783 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1887 8 36209438 36219771 Vra8g1887 8 36209438 36219771 ECH