Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1884 ATGGAAGCACCAGAGGAACTCTCTCTGGGGGGGTCCAAAGATCACGCCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTCAGACCACAATCCCCTGTCCCCTTCTCTGTCACCGCCAATTCCTCCACCGGAGAAGGAGAAAGAGAAGATTGTTGCAATGTTCATGACAACACCAACAACAACAACAAAAATTATGATATTAATAACAACATCATCATCAACAACATCAACAACTCTCCCACCACTTCTTCTGCAGGATTACAAGACAGCACGGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTTCTGGCACAAGGACAATCTCGGGAATCTCCAAAACATGTCGAGGAAGATGTGGGAATGAACTACGCCAAGTACAGCAGTAGGAAATTCTTGGAGGCTGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGTAACAGAACTTTCCCTTCTTTTCAAGCACTCGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAAGCAATCCTGCCCATTGCCCAAGACAAGAAACACCAACACCTTTTGTCATCGGATGAGGACGACTTTCAATTCAAGCCCAACAATAAATCATCATTTTCCCTTCAACTCGGTACAAAGCCCAATTTATACAACAAATCCAAGGTGCACGAGTGCTCCATCTGTGGTGCTGAATTCACATCGGGCCAAGCACTGGGAGGCCACATGAGACGCCACCGCGCACCGGTTGGGATCCCCACCACACTCTCCTTCACCCCATTGGCTCTGGAACCGGAAGAAGATCACCCCAGAAAGAAAAGGAATGTCTTGAACTTGGAATTGGATCTCAATCTTCCCGCCCCAGAAGATGATCAAAGAGAATCCAAGTTTTCCTTTGCATCCAAGCAACAACAACAACATGGACAACAGAAACAACAGCAACAACAACAACCACAACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCATTACTGA 1008 0.4712 MEAPEELSLGGSKDHANIVKGKRTKRVRPQSPVPFSVTANSSTGEGEREDCCNVHDNTNNNNKNYDINNNIIINNINNSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHVEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAILPIAQDKKHQHLLSSDEDDFQFKPNNKSSFSLQLGTKPNLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLALEPEEDHPRKKRNVLNLELDLNLPAPEDDQRESKFSFASKQQQQHGQQKQQQQQQPQPQTSLVLTAPALVDCHY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1884 335 MobiDBLite consensus disorder prediction 282 323 - -
Vra8g1884 335 MobiDBLite consensus disorder prediction 297 323 - -
Vra8g1884 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 245 IPR013087 -
Vra8g1884 335 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Vra8g1884 335 Pfam C2H2-type zinc finger 222 248 - -
Vra8g1884 335 Pfam C2H2-type zinc finger 147 173 - -
Vra8g1884 335 MobiDBLite consensus disorder prediction 31 47 - -
Vra8g1884 335 SUPERFAMILY beta-beta-alpha zinc fingers 147 245 IPR036236 -
Vra8g1884 335 PANTHER ZINC FINGER PROTEIN ZAT5 12 335 - -
Vra8g1884 335 SMART c2h2final6 148 170 IPR013087 -
Vra8g1884 335 SMART c2h2final6 223 245 IPR013087 -
Vra8g1884 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Vra8g1884 335 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Vra8g1884 335 MobiDBLite consensus disorder prediction 1 49 - -
Vra8g1884 335 Gene3D Classic Zinc Finger 146 245 - -
Vra8g1884 335 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1884 Vra-Chr8 36165974 36167589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1884 1 335 C2H2 Transcription Factor Family AT5G04390 44.652 5.42e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1884 zf-C2H2_6 6.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1884 - - vra:106771093 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2121 8 39033583 39034871 Vra8g1884 8 36165974 36167589 ECH
Vra3g0454 3 5230958 5232575 Vra8g1884 8 36165974 36167589 ECH
Vra4g0368 4 6546003 6547306 Vra8g1884 8 36165974 36167589 ECH
Vra8g1884 8 36165974 36167589 Vra8g1884 8 36165974 36167589 ECH