Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra8g1884 | ATGGAAGCACCAGAGGAACTCTCTCTGGGGGGGTCCAAAGATCACGCCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTCAGACCACAATCCCCTGTCCCCTTCTCTGTCACCGCCAATTCCTCCACCGGAGAAGGAGAAAGAGAAGATTGTTGCAATGTTCATGACAACACCAACAACAACAACAAAAATTATGATATTAATAACAACATCATCATCAACAACATCAACAACTCTCCCACCACTTCTTCTGCAGGATTACAAGACAGCACGGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTTCTGGCACAAGGACAATCTCGGGAATCTCCAAAACATGTCGAGGAAGATGTGGGAATGAACTACGCCAAGTACAGCAGTAGGAAATTCTTGGAGGCTGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGTAACAGAACTTTCCCTTCTTTTCAAGCACTCGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAAGCAATCCTGCCCATTGCCCAAGACAAGAAACACCAACACCTTTTGTCATCGGATGAGGACGACTTTCAATTCAAGCCCAACAATAAATCATCATTTTCCCTTCAACTCGGTACAAAGCCCAATTTATACAACAAATCCAAGGTGCACGAGTGCTCCATCTGTGGTGCTGAATTCACATCGGGCCAAGCACTGGGAGGCCACATGAGACGCCACCGCGCACCGGTTGGGATCCCCACCACACTCTCCTTCACCCCATTGGCTCTGGAACCGGAAGAAGATCACCCCAGAAAGAAAAGGAATGTCTTGAACTTGGAATTGGATCTCAATCTTCCCGCCCCAGAAGATGATCAAAGAGAATCCAAGTTTTCCTTTGCATCCAAGCAACAACAACAACATGGACAACAGAAACAACAGCAACAACAACAACCACAACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCATTACTGA | 1008 | 0.4712 | MEAPEELSLGGSKDHANIVKGKRTKRVRPQSPVPFSVTANSSTGEGEREDCCNVHDNTNNNNKNYDINNNIIINNINNSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHVEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAILPIAQDKKHQHLLSSDEDDFQFKPNNKSSFSLQLGTKPNLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLALEPEEDHPRKKRNVLNLELDLNLPAPEDDQRESKFSFASKQQQQHGQQKQQQQQQPQPQTSLVLTAPALVDCHY* | 336 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra8g1884 | 335 | MobiDBLite | consensus disorder prediction | 282 | 323 | - | - | |
Vra8g1884 | 335 | MobiDBLite | consensus disorder prediction | 297 | 323 | - | - | |
Vra8g1884 | 335 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 223 | 245 | IPR013087 | - | |
Vra8g1884 | 335 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 150 | 170 | IPR013087 | - | |
Vra8g1884 | 335 | Pfam | C2H2-type zinc finger | 222 | 248 | - | - | |
Vra8g1884 | 335 | Pfam | C2H2-type zinc finger | 147 | 173 | - | - | |
Vra8g1884 | 335 | MobiDBLite | consensus disorder prediction | 31 | 47 | - | - | |
Vra8g1884 | 335 | SUPERFAMILY | beta-beta-alpha zinc fingers | 147 | 245 | IPR036236 | - | |
Vra8g1884 | 335 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 12 | 335 | - | - | |
Vra8g1884 | 335 | SMART | c2h2final6 | 148 | 170 | IPR013087 | - | |
Vra8g1884 | 335 | SMART | c2h2final6 | 223 | 245 | IPR013087 | - | |
Vra8g1884 | 335 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 148 | 175 | IPR013087 | - | |
Vra8g1884 | 335 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 225 | 245 | IPR013087 | - | |
Vra8g1884 | 335 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Vra8g1884 | 335 | Gene3D | Classic Zinc Finger | 146 | 245 | - | - | |
Vra8g1884 | 335 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 12 | 335 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra8g1884 | Vra-Chr8 | 36165974 | 36167589 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra8g1884 | 1 | 335 | C2H2 Transcription Factor Family | AT5G04390 | 44.652 | 5.42e-82 | 251 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vra8g1884 | zf-C2H2_6 | 6.6e-13 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra8g1884 | - | - | vra:106771093 | 602.823 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra8g2121 | 8 | 39033583 | 39034871 | Vra8g1884 | 8 | 36165974 | 36167589 | ECH | |
Vra3g0454 | 3 | 5230958 | 5232575 | Vra8g1884 | 8 | 36165974 | 36167589 | ECH | |
Vra4g0368 | 4 | 6546003 | 6547306 | Vra8g1884 | 8 | 36165974 | 36167589 | ECH | |
Vra8g1884 | 8 | 36165974 | 36167589 | Vra8g1884 | 8 | 36165974 | 36167589 | ECH |