Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1880 ATGTTTTCTAGGTTGATACATCCCCATGAAGGGGGTGTTGGACAGGAAGACATGCAGGGTGCTTCCAATCATGCTCACCTCGGAGACCCTTGTCTTGTTCTCACCTCTGATCCCAAACCTCGTCTTCGGTGGACCGCTGACCTTCACGAACGCTTTGTTGACGCCGTCACTCAACTTGGGGGTGCCAGTAAAGCCACTCCTAAAGCGATCATGAGAACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAAAGTCATCTTCAGAAGTATAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGATGCAAAGATGGGATGTCAGGTTCGTATCTTCAAGAAAGCCCTGGTACTGACAACTCATCTCCAAAGTTACCAACTTCTGATGCAAACGAGGGTCATGAAGTGAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGTAAATTTCCTTCTCACAATAACTATGGTATTGCAGGCTGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGGTACATGGGCATGCTTGAGCGAGCATGTAAGATGTTAGCCGATCAATTTATTGGGGACATAATTATGGACACAGATGGCCAAAAATTTCAAGGGCTGGAAAGTAAAACACCCAGAAGTTCCCTAGTTGATCACGTTGGGTTTTTCCCCCCAGTATGTTCTGAGGTAGGAGGAATGCATGTTTCAGAAGTACCACCTATTCTCCAGCCTCAGGGGGCTGACTGTTCCACTGAAAGTTGCCTGACATCACTTGAGAGTTTAGGAGGGTTGACGCTTGAAGGATCTCCCGGTGGATCGAAGAAGAGGATGCTGAGCTTGGATTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACTCAAGGAATCCATTTAGCTCAAGTCAATCCTCCAGGAATAACTAGGTATGGTATGTAG 969 0.4634 MFSRLIHPHEGGVGQEDMQGASNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGMSGSYLQESPGTDNSSPKLPTSDANEGHEVKEALRAQMEVQSKLHLLVEVNFLLTITMVLQAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIIMDTDGQKFQGLESKTPRSSLVDHVGFFPPVCSEVGGMHVSEVPPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLSLDSMVAPLIWSEANTRTQGIHLAQVNPPGITRYGM* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1880 322 MobiDBLite consensus disorder prediction 1 24 - -
Vra8g1880 322 Pfam MYB-CC type transfactor, LHEQLE motif 137 194 IPR025756 -
Vra8g1880 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 322 IPR044848 GO:0003700
Vra8g1880 322 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Vra8g1880 322 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Vra8g1880 322 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 322 - -
Vra8g1880 322 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 39 94 IPR006447 GO:0003677
Vra8g1880 322 MobiDBLite consensus disorder prediction 93 133 - -
Vra8g1880 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 96 IPR017930 -
Vra8g1880 322 Gene3D - 38 96 - -
Vra8g1880 322 MobiDBLite consensus disorder prediction 113 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1880 Vra-Chr8 36113016 36116605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1880 8 266 G2-like Transcription Factor Family AT3G24120 44.776 8.70e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g1880 Myb_CC_LHEQLE 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1880 - - gmx:100779871 549.28