Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1872 ATGGGGTGTCTCTTGCTGCTTCTATGTTTTTCTAGCTTTTTATACGCTGTTTCCGCCTTAAACTCTGATGGGTTGGCTTTGTTGTCCCTCTCCCGGGACTGGATTGTTGGGTCTGGTGACATAAACTCCACATGGAAGTTGTCAGATTCCACTCCATGCTCGTGGGCGGGAGTGCATTGTGATAGTGCCAATAATGTGAATTCTCTAAACCTCAGTAGATCTTCTATTTTTGGCCAATTAGGACCTGAAATTGGACGTTTGATTCACTTGCAGTCCATAGACTTATCATATAATGATATGTTTGGAAATATTCCCCCAGAATTAAACAACTGTACCATGCTTGAGTACATGGACCTTACTGTAAACAACTTTAGTGGAGGAATACCAGAGAGCTTTAGAAACTTGCAAGATTTGAAGTATGTGGATCTCTCAATTAATCTGCTGAGTGGTGAAATTCCTAAATTCTTGTGGGAATTTCCTCTCCTGGAAGAAGCGTATCTCAGTCACAACAGTTTAAGTGGTTCCATTCCCTCAAGTATTGGGAATATGACCAACCTTGTCACACTGGATCTTTCTTATAATCCGCTGTCAGGGACTATTCCCATGTCCATTGGAAATTGTAGTAAATTAGAAAATCTGTATTTGTTAGGTAATGGATTGCAGGGTGTTATTCCGGAGAGTTTAAATAATCTCGAAAATCTTCTTGAGTTATTTCTAGATCGTAATAGTCTTGGAGGTACTATTCAACTAGGATCTAGAAATTGTAAAAAGTTGTCTATTCTGTCTCTTTCTCGCAATAACTTCAGTGGGGGTATACCATCAAGCTTGGGGAATTGTAGTGGTCTAATAGAGTTTTATGCTACAGCCAGTAACTTAGTTGGCAGTATACCGCCAACCTTAGGACTCCTTACAAACCTTTCTATTCTAGCGATTCCAGAGAACAGTTTGTCAGGGAAAATACCTCCACAAATTGGTAATTGCAAATCACTGGATATGTTGTATTTGAATTCCAATGAACTCGAAGGAGAAATTCCTAGTGAATTGGGAAACTTGAGTATATTACGCGAACTTATGTTGTTTGAAAACCATTTGACAGGAAATATTCCACTTGGCATTTGGAAAATTCCAACACTTGAGCAGGTACACGTATACATTAACAACCTTTCAGGTGAGCTACCTCTGGAGATGGCAGAGCTTAAACATCTTAAGAATATCTCCTTCTTTGAAAATCAGTTCTCTGGAGTCATTCCTCAAAGCTTAGGAATCAATAGCAGTTTGGTTGTGTTAGACGTCACAGATAATAATTTCACCGGTCCCATCCCACCAAATGTTTGCTTTGGAAAGCAATTGGTCAGGTTGAATATGGCTAAAAATAAATTTTATGGCAGCATACCACCTGATCTTGGAAGATGCACAACTCTTGCAAGGCTGAGACTCGAAGGAAACAATTTCTCTGGGGCACTTCCTGATTTTGAAACTAATCCAAATCTCCTTCATATGAGCATCAACAACAACAAAATCAGTGGGGAAATTCCATCAAGTTTTGGAAACTTCACAAATCTCTCTCTTTTAGATTTATCTGTGAACAGCTTGACAGGTCTTGTACCCTCGGAGCTGGGAAACCTTGTGAATCTCCGGACTTTGGTTCTTTCTCACAATACTTTTAAAGGTCCTTTGCCACATCAACTGTCAAACTGTAACAAAATGATCAATTTTGACGTTGGATTCAATTTCTTGAATGGTTCATTTCCATCAAATTTTCGGAACTGGACTGAATTAAATACTTTAATTCTCTCAGAGAATAATTTTGATGGTGGTATTCCAGCATTCTTGTCAGAATTTGAAAGGCTCAATGATTTACAACTTGGAGGAAACATGTTTGGAGGAAGCATTCCTAGATCAATTGGAGAACTGGTGGATTTGATGTATGTTCTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCTAGGGAGATCGAGAACCTGAAGAATCTGATAAAACTGGATCTATCTTGGAACAATTTGACAGGAAGTATACAAGTTCTCGATGAGCTCAGTTCATTATCTGAGTTCAACATTTCATATAATTCTTTTGAAGGTCGTGTTCCACTACGGCTAACAAATTTTACAAATTCCTCTCGATCGTTTTTCGGAAATCCTGGCCTATGTATCTCAAATTTCCCTGAAAACAGCTATTTGAGGCCATGTGATACAAATTCAAAAACGTCAAAAAGGCTCAGTAACGTTGCAATTGCATTGATAGCACTTGGATCCTCGATATCTGTTGTTCTGTTGCTGGGGTTAATTTATATATTCATTATCAGAAAAATTAAGCAGGAAGCCACAACCAATGAAGAAGATAGTTCTCCAACCCTTCTCAATATGGTTATGGAAGCTACAGAAAATCTAAATGACCAGTATATTATCGGCAGAGGAGCTCAAGGAGTTGTCTATAAAGCAGCACTTGGTCCAGACAATATTTTGGCTATAAAGAAGTTTGTATTTGCTAGTGATGAAGCGAAGAGCTCAAGCATGACCAGAGAAATTCAAACCCTTGGAAATATTAGGCATCGAAATTTGGCCAAAATGGAAGGCTGCTGGTTGAGAGAAAACTATGGTCTAATTGCATACAAATACATGCCAAATGGAAGTCTGCACGATGCTTTGCATGAGAAGAAGGGATCACACTCCTTAGAGTGGAATATCCGGAATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTCCATCATGACTGTGATCCCGTCATAGTGCACAGAGATATCAAAACGACTAACATACTTCTAGATTCTGAGATGGAGCCTCATATTGCAGATTTTGGTATTGCAAAGCTTTTGGATCAGCCTTCTACCTCCATACAGTCAATATATGTCACTGGTACACTTGGTTATATACCACCAGAAAATGCTTATACAACAAGAATGGGTAAAGAGTCCGATGTATACAGTTATGGTGTAGTATTGCTGGAGCTGATATCCAGAAAGAAGGCATTGGATCCATCATTTGTAGAAGGAACAGATATAGTTACTTGGGCTAGATCTGCCTGGGAGGAAGCAGGAGACGTGAATGAAATTGTTGATCCAGAGTTGGCTGGTGAAATTTCAAATTCTGAAGTGATGAAACAAGTAAAAAAGGTGCTTTCAGTGGCTTTGAGATGTACATTAAAGGATCCACGCAGCAGACCAACGATGAGGGATGTTATCAAGCATTTGTATGCAGATGTTAAAAACTCCACATAG 3267 0.3909 MGCLLLLLCFSSFLYAVSALNSDGLALLSLSRDWIVGSGDINSTWKLSDSTPCSWAGVHCDSANNVNSLNLSRSSIFGQLGPEIGRLIHLQSIDLSYNDMFGNIPPELNNCTMLEYMDLTVNNFSGGIPESFRNLQDLKYVDLSINLLSGEIPKFLWEFPLLEEAYLSHNSLSGSIPSSIGNMTNLVTLDLSYNPLSGTIPMSIGNCSKLENLYLLGNGLQGVIPESLNNLENLLELFLDRNSLGGTIQLGSRNCKKLSILSLSRNNFSGGIPSSLGNCSGLIEFYATASNLVGSIPPTLGLLTNLSILAIPENSLSGKIPPQIGNCKSLDMLYLNSNELEGEIPSELGNLSILRELMLFENHLTGNIPLGIWKIPTLEQVHVYINNLSGELPLEMAELKHLKNISFFENQFSGVIPQSLGINSSLVVLDVTDNNFTGPIPPNVCFGKQLVRLNMAKNKFYGSIPPDLGRCTTLARLRLEGNNFSGALPDFETNPNLLHMSINNNKISGEIPSSFGNFTNLSLLDLSVNSLTGLVPSELGNLVNLRTLVLSHNTFKGPLPHQLSNCNKMINFDVGFNFLNGSFPSNFRNWTELNTLILSENNFDGGIPAFLSEFERLNDLQLGGNMFGGSIPRSIGELVDLMYVLNLSANGLIGELPREIENLKNLIKLDLSWNNLTGSIQVLDELSSLSEFNISYNSFEGRVPLRLTNFTNSSRSFFGNPGLCISNFPENSYLRPCDTNSKTSKRLSNVAIALIALGSSISVVLLLGLIYIFIIRKIKQEATTNEEDSSPTLLNMVMEATENLNDQYIIGRGAQGVVYKAALGPDNILAIKKFVFASDEAKSSSMTREIQTLGNIRHRNLAKMEGCWLRENYGLIAYKYMPNGSLHDALHEKKGSHSLEWNIRNKIAVGIAHGLAYLHHDCDPVIVHRDIKTTNILLDSEMEPHIADFGIAKLLDQPSTSIQSIYVTGTLGYIPPENAYTTRMGKESDVYSYGVVLLELISRKKALDPSFVEGTDIVTWARSAWEEAGDVNEIVDPELAGEISNSEVMKQVKKVLSVALRCTLKDPRSRPTMRDVIKHLYADVKNST* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1872 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Vra8g1872 1088 Gene3D Ribonuclease Inhibitor 210 284 IPR032675 -
Vra8g1872 1088 Gene3D Ribonuclease Inhibitor 24 131 IPR032675 -
Vra8g1872 1088 Gene3D Transferase(Phosphotransferase) domain 1 881 1087 - -
Vra8g1872 1088 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 1079 - -
Vra8g1872 1088 Pfam Leucine rich repeat 495 553 IPR001611 GO:0005515
Vra8g1872 1088 Gene3D Ribonuclease Inhibitor 390 733 IPR032675 -
Vra8g1872 1088 ProSiteProfiles Protein kinase domain profile. 804 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1872 1088 Gene3D Ribonuclease Inhibitor 132 209 IPR032675 -
Vra8g1872 1088 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Vra8g1872 1088 Gene3D Phosphorylase Kinase; domain 1 773 880 - -
Vra8g1872 1088 SUPERFAMILY RNI-like 224 532 - -
Vra8g1872 1088 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 1079 - -
Vra8g1872 1088 SUPERFAMILY L domain-like 491 724 - -
Vra8g1872 1088 Pfam Protein kinase domain 808 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1872 1088 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Vra8g1872 1088 Gene3D Ribonuclease Inhibitor 285 389 IPR032675 -
Vra8g1872 1088 SMART serkin_6 804 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1872 1088 SUPERFAMILY Protein kinase-like (PK-like) 792 1081 IPR011009 -
Vra8g1872 1088 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515
Vra8g1872 1088 SUPERFAMILY L domain-like 25 285 - -
Vra8g1872 1088 SMART LRR_typ_2 518 541 IPR003591 -
Vra8g1872 1088 SMART LRR_typ_2 87 111 IPR003591 -
Vra8g1872 1088 SMART LRR_typ_2 663 690 IPR003591 -
Vra8g1872 1088 SMART LRR_typ_2 231 255 IPR003591 -
Vra8g1872 1088 SMART LRR_typ_2 542 566 IPR003591 -
Vra8g1872 1088 SMART LRR_typ_2 183 207 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1872 Vra-Chr8 36053787 36057569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1872 11 1086 Receptor kinase-like Gene Family AT1G73080 49.909 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra8g1872 Pkinase 5.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1872 - - gmx:100817655 1660.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1872 8 36053787 36057569 Vra8g1872 8 36053787 36057569 ECH