Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra8g1870 | ATGAACAACGGCACAACCAGCAAGGGCTATGGTTTTAACTCAGATGGGTTCAGATATGGAGTAGCTTTTGTAATTGGGTCGCTGGTATTACTTCTCACGGTGGCTTTTGCATGTGTGCGCCTTCGCATGGCCGGAATTCCACCATCTCATCCCACAAGAGATGAAGACTCAGCTGAACAAGGCTTTGATCACATCGACACAAGCTTTGAAAGCTATCCGAAACTTTTATACTCCCAAGTAGAGAAGGGTTCAACTTCAACCAGCATCCCTTCTTCTAGCTGCTCCATCTGCTTAGGTGACTACAAAGAGGGTGACATTTTGAGTTCAGAGGAGTCTGTGTTATTGCTAGTGAGCTTTATTATTCTGACTCTTATCGTCACACTTGCTGCTTATTTGTGCTCTACTGATATTCCACGTACTACTCCTTCTGTTCCTGCAGCTGTGACGCACTCCAACCACACCACAATCACTGTGGAGGCACCTGAGCCATGCATAGATCAGAGTGTCTGCAACTTTCCAAATCTCCAATTTTCCAAAACCAAATTGTGTGGTAGCACTAGCAGTAGCTCTTCAAGCTGTTCCATATGCTTGATGGATTACAAAGACCGTGATTCCTTGAGAGTGTTGCCTGCCTGTGGTCACTTCTTCCATGTCAAGTGTGTTGATCCTTGGTTGAGAATCAATATGACCTGTCCAGTTTGTAGGACCCCAATAACCCTCTCAGATGTAACCAAAACTTTTTAG | 744 | 0.4489 | MNNGTTSKGYGFNSDGFRYGVAFVIGSLVLLLTVAFACVRLRMAGIPPSHPTRDEDSAEQGFDHIDTSFESYPKLLYSQVEKGSTSTSIPSSSCSICLGDYKEGDILSSEESVLLLVSFIILTLIVTLAAYLCSTDIPRTTPSVPAAVTHSNHTTITVEAPEPCIDQSVCNFPNLQFSKTKLCGSTSSSSSSCSICLMDYKDRDSLRVLPACGHFFHVKCVDPWLRINMTCPVCRTPITLSDVTKTF* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra8g1870 | 247 | SUPERFAMILY | RING/U-box | 186 | 241 | - | - | |
| Vra8g1870 | 247 | Pfam | Ring finger domain | 192 | 235 | IPR001841 | - | |
| Vra8g1870 | 247 | CDD | RING-H2_PA-TM-RING | 195 | 235 | - | - | |
| Vra8g1870 | 247 | SMART | ring_2 | 193 | 234 | IPR001841 | - | |
| Vra8g1870 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 243 | IPR013083 | - | |
| Vra8g1870 | 247 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 8 | 107 | IPR045899 | - | |
| Vra8g1870 | 247 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 113 | 239 | IPR045899 | - | |
| Vra8g1870 | 247 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 113 | 239 | - | - | |
| Vra8g1870 | 247 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 8 | 107 | - | - | |
| Vra8g1870 | 247 | ProSiteProfiles | Zinc finger RING-type profile. | 193 | 235 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra8g1870 | Vra-Chr8 | 36031002 | 36032962 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra8g1870 | 166 | 236 | C3H Transcription Factor Family | AT5G06490 | 51.351 | 1.37e-20 | 84.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra8g1870 | - | - | vra:106770594 | 468.774 |