Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1863 ATGCACAAATGTATATTTCTTGATGGGATATTCAGTAGGATGGCAGGGAACTTCAGATTCACAATGGATCAGAAGGACATTGTTAGATTATTGACTACAACTATAGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAGCAACGAGCCCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGAAGGAAGTTGTGATAAGGACAGTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACATATAACATGGAAACTAAGCTTGCTAGGCTAGATTATTCAGAGAAGATGTTACAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACATCTAAATCTATCCTATTTATGGAAGTTGAGGAACAGCATTCAAAATTGTGTTCTCCATGCTCTTGAGATGTTCATTGTTGACCCCTTTTTTTCACGGATTGATTTTGCTCCTGAACTCTGGACGAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGTTGGTATTCTGAGGAGAGACATAGGCTTATGATGGAAGTGATACCAGACTCGAGTGATTTGTCCTTTACAGCTGATTTTGATCGGTTTTTCAACGAGTCTTTGGTATTTTCTATGAGGCCACATCAGTTAGACAAATTGCAAAAGCTGGAGCAGCTTTATGCAGAATCATTGGATGAAAACACACGGCTATACGCAAAATATTATAAAGATTGCATGAATTCTGATTCCACTTCAGGCAAGAAGGCAGCTCCTATGTTGCCTATTGCTGAGCCACCAAGGACTCCTTTGCATGAGTTGAGTCGGTCTGTTCCTGATTTTGTAAAATTTGGCCCTATCTTGCCCAAGAGTGCGGGGTTCTCTTTGACAACAAGATCTAAAGATGTTGTAAATGAAACAAACAGCACAGAGAATTCAACTTCCAGCCAATCAAAGGTTGAGAAATCATCCATATGGGCTGCTAAGGAAAGCATCATTGAGGAGAATGAGAATGAAAATGATTCAGATTCTGAGCTTGATGATGGTTCAGTGGATTCAGATAGAAGAAACAATATTTTATCACCAGGAATGAAGATGGCCAAGGATGAGGATATTGAACTAAAGGCGCCTCTATCAAACCATAAGAATAAGATTCATTCTCCTGATATCTTCTCTCCCTTGGATTCCCCAAAAGCAGGTCCAAATAATTCGTCAACAAATCCTGATACAAACAATAAGAGAGAACCCAAGTATCTTCGCTTACTGTCTACTCGTTTGAGGGACTCAACTACTTCTGACTCTTTATCATCATCATCTCTAGAAATGAGCACGGATCATATGTTGAACTCTGACACAGAAATAAGGGGCTTGAAGAATATAAAGAGGAAAAACAATAACCAAACACCAAGTATGAATCATGACAGTGGGAATAGCCTAGGACTAAATGACAGTTCCCTTTGTGAAAGTGACGAGGAAAATCAAAGCTTCACTATGTTGCCTAAGTTAGAGAAGCTGACAATTGGACCAAAACCACCAAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTGACCCTTGAAACAGGCCAGACTTATGAAAGAAAAGCAATTCAAGAATGGCTCAGAACAGGTAACACGACATGCCCCATCACGCGGCAGCCTCTGTCTGCAAATATATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACGTCATGGAAAGAACAGAATCCAGAACTGGCGCATGAACTCTCGAATTCTAACACTCCAAGGGGTTCTTCCTGTTCTCCATCTGCAAAAGACTTTCAAATGCTCTCCATTACACATAGAGCAACTGATTCACCAGGACTGAAGAGCAAAGAAAATTATACCAGACAAAGGAGCAACAGATTTATGCGAGTTTCTGTTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTTGAAACAATTTTGAATTCCTTGAAACCTTACGTTTCAAGTCTTTCTACCTCAGACAACTTGCAAGAATGTGAAGAAGCAGTGATGGAAATAGCAAGATTATGGAAAGATTCAAAGACAGATCCTCAGATTCATGGCTATTTATCAAAGCCAGCAATCATAAGTGGTTTGGTTGAAATACTTTCAGCTTCTATGAGTAGAGTAGTTTTGAGAACATCAATTTATATACTCTCTGAGTTGATATTTTTAGATGAAAGTGTTGGAGAAACACTTAACAGTGTTGATTCTGATTTTGATTGCTTGGCTGCTCTGCTTAAGAACGGTTTAGCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTTGGCACATGATCTTGTACCATCTCTTGTGCAAGTTATTCAGAATGAAAATGAGGCTTCAAATGATTTTCAGTTAGTAATAGACCCCAAAGATGCTGCCATAGCAATACTTGAGCAGATTTTAATAGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCTGAAAATGGAATTCCATCCTTAGCAAAGTATCTAGAGAGGATGGAGGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAGGGTTGCAAGAGTTTGATAGCCAACAGAATTGAATTGTCTCCTGTGCTTGAATTATTTCACGCTGGAAATGACAGTGTGCGAGGCATCTGCGTGGAGTTTCTCTCAGAACTGGTTCAATTGAATAGAAGGACAGTCTGCAACCAGATATTACAAACAATCAAGGATGAAGGAGCATTTAGTACGATGCATACGTTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCTAGCCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCACGGAAAATGAGCATTTACAGGGAAGAAGCGATAGAGATACTTATAGAAGCACTTTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTCTAGATGCTTTACTGTTTCTTATTGGACAAGTAACCACCACTGGAAAGTCATACACTGAAGCTTGGTTGCTCAAGATTGCAGGATTTGATCAACCTTACAATGCTTTACTTAAGGCTGGGCAGTTGGGACAGTATGACAACGATTCAATGGAAACAATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAGCCTTTGTGCTTTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCTTTAAAGATGGCAAAATCTTGCCTTGTTCTTGTGGCATGGCTCACACACATGCTCTCTACTCTTCCTGATACCGGCATAAAGGATGTTGCTCGCAAATCTTTGCTTGATGAACTTATAAATATCCTGCAATCATCTAAGAACCTAGAGGAGATGATATTGGCTAGCCTAGCCTTGAAAAGCTTCCTTAGTGATCCAATTACTCAAGAAGCACTTGGAGCTTATGCTAAGAGAATCTATAGAACCATGAGGAAGCTGAAGAGATATTCAACAGTAGCAGTTGATATTATGAAGACCTTACTAAACTTAAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAGGAAGTTGTTGAGTTAGATTTGAGTTCAAATGGCGAGGTCCTTTCTTTGCATTACATGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGAAAGAGAATACCAAGAGTGATTCAAGAAACCCGAGAGCACACAAAAGCTGTAACATCGCTATGTTCTTCAGATGATAGACTATACAGCGGTTCCTTAGACAAAACCATTCGGGTTTGGACAATCAAACCAGATGAAATTAAATGTATAGATGTTCATGATGTAAAGGAGCCGGTGTATGAGCTGACAGCCAATGCCAAATTGGCATGCTATGTATCTCAAGGAAGTGGAGTTAAGGTTTTCAAGTGGTCAGAGGCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTAGCTGTTGGTGGGGACAAACTGTATTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTATCCAAAAATACATCAAACTCATTCTTCTCTGGAACAAGAAAGTTGTTGGGAAAACAAACCATATACTCCCTTCGAGTTCATGATGATCTCCTCTTTGCTTGTGGTTCTTCAGTTGATGCGACTGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGGTCACTCTCAACTGGACTTGACATCCATCGCATAGCCATTAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTGAAAGATAAGCTCACCCGGGTTGCTTCAATCAAAATGGCTGGTGGTCACACAAAGATCACATCTTTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCTTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4512 0.4016 MHKCIFLDGIFSRMAGNFRFTMDQKDIVRLLTTTIDSFIQDRLINKEQRAQHKEQCAERLAAEEGSCDKDSEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYSEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRNSIQNCVLHALEMFIVDPFFSRIDFAPELWTNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDRFFNESLVFSMRPHQLDKLQKLEQLYAESLDENTRLYAKYYKDCMNSDSTSGKKAAPMLPIAEPPRTPLHELSRSVPDFVKFGPILPKSAGFSLTTRSKDVVNETNSTENSTSSQSKVEKSSIWAAKESIIEENENENDSDSELDDGSVDSDRRNNILSPGMKMAKDEDIELKAPLSNHKNKIHSPDIFSPLDSPKAGPNNSSTNPDTNNKREPKYLRLLSTRLRDSTTSDSLSSSSLEMSTDHMLNSDTEIRGLKNIKRKNNNQTPSMNHDSGNSLGLNDSSLCESDEENQSFTMLPKLEKLTIGPKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANILPKTNYVLKRLITSWKEQNPELAHELSNSNTPRGSSCSPSAKDFQMLSITHRATDSPGLKSKENYTRQRSNRFMRVSVATSPTSVLSQAAVETILNSLKPYVSSLSTSDNLQECEEAVMEIARLWKDSKTDPQIHGYLSKPAIISGLVEILSASMSRVVLRTSIYILSELIFLDESVGETLNSVDSDFDCLAALLKNGLAEAALLIYQLRPVFAQLLAHDLVPSLVQVIQNENEASNDFQLVIDPKDAAIAILEQILIGGDEYSRSLNALSVISENGIPSLAKYLERMEGRRSVVSILLCCMQAEKGCKSLIANRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTVCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAIEILIEALWQKDFSNTQMKALDALLFLIGQVTTTGKSYTEAWLLKIAGFDQPYNALLKAGQLGQYDNDSMETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVAWLTHMLSTLPDTGIKDVARKSLLDELINILQSSKNLEEMILASLALKSFLSDPITQEALGAYAKRIYRTMRKLKRYSTVAVDIMKTLLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYMNGQVLSGHSDGTIKVWDARKRIPRVIQETREHTKAVTSLCSSDDRLYSGSLDKTIRVWTIKPDEIKCIDVHDVKEPVYELTANAKLACYVSQGSGVKVFKWSEAPKLINFNKYVKCLAVGGDKLYCGCSGYSIQEVDLSKNTSNSFFSGTRKLLGKQTIYSLRVHDDLLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKLTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD* 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1863 1503 PRINTS G protein beta WD-40 repeat signature 1237 1251 IPR020472 -
Vra8g1863 1503 PRINTS G protein beta WD-40 repeat signature 1279 1293 IPR020472 -
Vra8g1863 1503 PRINTS G protein beta WD-40 repeat signature 1488 1502 IPR020472 -
Vra8g1863 1503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1262 1294 - -
Vra8g1863 1503 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1503 - -
Vra8g1863 1503 SUPERFAMILY WD40 repeat-like 1230 1502 IPR036322 GO:0005515
Vra8g1863 1503 MobiDBLite consensus disorder prediction 322 341 - -
Vra8g1863 1503 CDD RING-Ubox_PUB 532 574 IPR045210 -
Vra8g1863 1503 MobiDBLite consensus disorder prediction 478 504 - -
Vra8g1863 1503 MobiDBLite consensus disorder prediction 267 289 - -
Vra8g1863 1503 ProSiteProfiles Trp-Asp (WD) repeats profile. 1469 1503 IPR001680 GO:0005515
Vra8g1863 1503 MobiDBLite consensus disorder prediction 441 467 - -
Vra8g1863 1503 SUPERFAMILY RING/U-box 527 600 - -
Vra8g1863 1503 SMART Ubox_2 531 595 IPR003613 GO:0004842|GO:0016567
Vra8g1863 1503 MobiDBLite consensus disorder prediction 350 504 - -
Vra8g1863 1503 ProSiteProfiles U-box domain profile. 527 602 IPR003613 GO:0004842|GO:0016567
Vra8g1863 1503 ProSiteProfiles Trp-Asp (WD) repeats profile. 1262 1294 IPR001680 GO:0005515
Vra8g1863 1503 MobiDBLite consensus disorder prediction 383 399 - -
Vra8g1863 1503 Coils Coil 238 258 - -
Vra8g1863 1503 Gene3D - 1198 1503 IPR015943 GO:0005515
Vra8g1863 1503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 519 610 IPR013083 -
Vra8g1863 1503 SMART WD40_4 1460 1501 IPR001680 GO:0005515
Vra8g1863 1503 SMART WD40_4 1255 1292 IPR001680 GO:0005515
Vra8g1863 1503 SMART WD40_4 1212 1250 IPR001680 GO:0005515
Vra8g1863 1503 Pfam WD domain, G-beta repeat 1261 1291 IPR001680 GO:0005515
Vra8g1863 1503 Pfam WD domain, G-beta repeat 1471 1500 IPR001680 GO:0005515
Vra8g1863 1503 Pfam WD domain, G-beta repeat 1232 1250 IPR001680 GO:0005515
Vra8g1863 1503 SUPERFAMILY ARM repeat 678 1021 IPR016024 -
Vra8g1863 1503 MobiDBLite consensus disorder prediction 414 429 - -
Vra8g1863 1503 ProSiteProfiles Trp-Asp (WD) repeats profile. 1237 1250 IPR001680 GO:0005515
Vra8g1863 1503 Pfam U-box domain 529 599 IPR003613 GO:0004842|GO:0016567
Vra8g1863 1503 Gene3D - 652 1028 IPR011989 -
Vra8g1863 1503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1469 1503 - -
Vra8g1863 1503 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1863 Vra-Chr8 35985195 35993194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1863 529 676 U-box Gene Family AT5G42340 34.132 1.29e-16 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1863 - - gmx:100776142 2573.89