Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1859 ATGGCCACAGAAGAAGAAATTTCAACTCTGAAACTGATGCGCCAATATCTCTTGGGAGATATTTCGGACCCGTTTCTCACTAACCTCATCCCTGTAAAAGTTGAAGACTCCTCATCAGAACTTGATTTGGATTCAAACTCTTCAGAACAAAGCAACTGCTGCAGGTTTCTAGAATACTTTGATTTTGAAGCAGACAAAGAACTGACAGATCTCAGTTCTCATCATAATATCCAAAACTCCATTGCTAAAAGTCCACTCAAGAATTCTGATCTGGCAGATCCAATTGTGCCAGTGAAAAAGGAAGTAACATGTTGTTATGAGGCAAGGCGTTACAGAGGAGTGAGGAGAAGACCATGGGGGAAGTTTGCTGCAGAAATCCGTGACCCCAAAAGGAAAGGGAGCAGGGTGTGGCTAGGTACGTATGACAGTGAAATTGATGCTGCTAAAGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCAGAAGGCTGTATTGAATTTCCCTTTGGAGGCTGGAAGGTCTCATCCAGAACCCAACACTTCTGGCAGGAAGAGAAGAAGAGACTGCACTGCAACTGTCACAACTTCAACTCATGTATGTCATGAAAAATAA 612 0.4314 MATEEEISTLKLMRQYLLGDISDPFLTNLIPVKVEDSSSELDLDSNSSEQSNCCRFLEYFDFEADKELTDLSSHHNIQNSIAKSPLKNSDLADPIVPVKKEVTCCYEARRYRGVRRRPWGKFAAEIRDPKRKGSRVWLGTYDSEIDAAKAYDCAAFRMRGQKAVLNFPLEAGRSHPEPNTSGRKRRRDCTATVTTSTHVCHEK* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1859 203 MobiDBLite consensus disorder prediction 170 203 - -
Vra8g1859 203 MobiDBLite consensus disorder prediction 177 191 - -
Vra8g1859 203 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Vra8g1859 203 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Vra8g1859 203 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Vra8g1859 203 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Vra8g1859 203 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Vra8g1859 203 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Vra8g1859 203 CDD AP2 118 168 IPR001471 GO:0003700|GO:0006355
Vra8g1859 203 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Vra8g1859 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 189 - -
Vra8g1859 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1859 Vra-Chr8 35927025 35928884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1859 107 187 AP2-EREBP Transcription Factor Family AT5G07580 72.840 4.26e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g1859 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1859 - - pvu:PHAVU_007G135900g 351.673