Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1853 ATGAAGGGTACATTTCCAAAGAAGGAAATCTTCACTGAAAAGAAATTTTCAACTTGTTTGCAGGAAATGGCAACAGGATCAAAGTTTTTGGACAATGCAATGATAGGGGGTTCTCACTCTCTCACTTCCTATAACCATCTTCATGTGTTAAGAAGTGGGGCAAACTCATCAATAACATCATCTCAACATCTTCTTTCATGTTCAAATTCTACTTCAATGAAAGAAGAGGTACCTTTAGCCACATGGATTAGCCATATCCCTGCAAAATACAATGGCCCTCAAGACATAAAAAATGTTAGAGAGAAAAACCAATCCAATTCTATCTTCCCAGCCTCAGACACAAAAAACAGCTCCATTCCTCTAAATCTTTTGGAAACTCTCCCACCATTGACTATGGCACCATGTTTTGATGAGCCTGTTGCTTCCTTGGCCTCTTCTTCTGCCCCACCCAATTTTCCAAACTTGACTTTGGTTTTGCAGGAACCCTCCATGGTGTACTCATCATCATCATCAAATATGAAAAGTGGTGAAGTCATGTCTGTAACTTCTAACCCCACCTATCAAGTTCCTCACTTTGGGCAAAACCAGCATCAAGCAGGTAGTGATGCACACAAAACGAACAAGAATCTGAAGTCTTTCAACGAGAATTGGTTGAGTAGCACTAGGACTCAGCCTATGAAGTATGGTGGAAGAGGCAAGCTGTTTAAAGGTGTGAGGCAGAGACACTGGGGGAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTGAGAGGAGAATATGCACAGTTGAACTTCCCAGATCTCAAGCATGTAATCCAGGCCAATTCTCTGAATGGAACCACTGCAGCACTTGTGGAAGCAAAACTACAAGCAATATCTCAAGGTGTTTCTTCTCACAGGAAGCCTACTGACTCACCAGCAGGCTTAAGCAACAAGCACACTGATGAGAATGGCAAATTGAAAAGTACAAATGACAAGAATTCAACCATGAAAGAGTGGCAGTTTGATAATACTGAGAAAAGCAAAAGTATACACCATGAGATATCAGATATGGAAACTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACAGCATTTGGGATGAACTTTTGGTCTCTAATTCATGA 1206 0.4138 MKGTFPKKEIFTEKKFSTCLQEMATGSKFLDNAMIGGSHSLTSYNHLHVLRSGANSSITSSQHLLSCSNSTSMKEEVPLATWISHIPAKYNGPQDIKNVREKNQSNSIFPASDTKNSSIPLNLLETLPPLTMAPCFDEPVASLASSSAPPNFPNLTLVLQEPSMVYSSSSSNMKSGEVMSVTSNPTYQVPHFGQNQHQAGSDAHKTNKNLKSFNENWLSSTRTQPMKYGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSHRKPTDSPAGLSNKHTDENGKLKSTNDKNSTMKEWQFDNTEKSKSIHHEISDMETVQLSRMPSLDMDSIWDELLVSNS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1853 401 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 10 400 - -
Vra8g1853 401 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Vra8g1853 401 MobiDBLite consensus disorder prediction 339 371 - -
Vra8g1853 401 Pfam AP2 domain 235 283 IPR001471 GO:0003700|GO:0006355
Vra8g1853 401 SUPERFAMILY DNA-binding domain 234 292 IPR016177 GO:0003677
Vra8g1853 401 MobiDBLite consensus disorder prediction 319 371 - -
Vra8g1853 401 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Vra8g1853 401 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Vra8g1853 401 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Vra8g1853 401 PRINTS Ethylene responsive element binding protein signature 257 273 IPR001471 GO:0003700|GO:0006355
Vra8g1853 401 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 400 - -
Vra8g1853 401 Gene3D AP2/ERF domain 234 292 IPR036955 GO:0003700|GO:0006355
Vra8g1853 401 MobiDBLite consensus disorder prediction 319 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1853 Vra-Chr8 35869441 35870776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1853 117 396 AP2-EREBP Transcription Factor Family AT4G13620 45.704 5.38e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g1853 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1853 - - gmx:100820013 610.912