Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1839 ATGGTTTGTGAGATGTCGGATGCACCAGCCAGCCCGAGTCACGAGAGTGGGGGCGAGCAGAGTCCGCGAGCTTTCTCATCTGGTGCCAGGGAACAGGACCGCTTCCTTCCTATTGCCAATATCAGCCGCATTATGAAGAAGGGTCTGCCTCCCAACGGCAAGATTGCTAAAGACGCTAAAGATACTATGCAGGAATGTGTTTCTGAATTTATCAGCTTCGTCACCAGCGAGGCTAGTGAGAAATGTCAGAAAGAGAAGAGAAAGACTATTAATGGAGACGATCTGTTATGGGCAATGGCCACTTTAGGTTTTGAAGACTACATAGAACCCCTTAAGGTGTACCTGGCAAGGTACAGAGAGACGGAGGGTGACACCAAAGGATCTGCTAGAGGTGGTGATGGATCTGCTAGACCAGATCAAGTTGGCCTTGCAGGTCAAAATTCTCAGCTTGTTCATCAGGGTTCACTGAACTATATTAGTTTGCAGGTGCAACCACAACATCTGGTTATACCTTCAATGCAAAGCCATGAATAG 534 0.4775 MVCEMSDAPASPSHESGGEQSPRAFSSGAREQDRFLPIANISRIMKKGLPPNGKIAKDAKDTMQECVSEFISFVTSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRETEGDTKGSARGGDGSARPDQVGLAGQNSQLVHQGSLNYISLQVQPQHLVIPSMQSHE* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1839 177 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra8g1839 177 PANTHER BNAA04G21250D PROTEIN 11 156 - -
Vra8g1839 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra8g1839 177 MobiDBLite consensus disorder prediction 13 27 - -
Vra8g1839 177 MobiDBLite consensus disorder prediction 1 31 - -
Vra8g1839 177 Gene3D Histone, subunit A 22 157 IPR009072 GO:0046982
Vra8g1839 177 MobiDBLite consensus disorder prediction 122 142 - -
Vra8g1839 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Vra8g1839 177 SUPERFAMILY Histone-fold 32 147 IPR009072 GO:0046982
Vra8g1839 177 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Vra8g1839 177 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Vra8g1839 177 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1839 Vra-Chr8 35753212 35761080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1839 13 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.000 3.64e-81 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra8g1839 CBFD_NFYB_HMF 1.9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1839 K08065 - gmx:100779577 327.791