Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1830 ATGTATTGGGGAGTTATGGCAGGCAACATGGGGTGGGGTGTGATAGAGGAACAAGGATGGAGGAAGGGTCCTTGGACTGCTGAAGAAGACAGATTGCTCATTCAGTATGTCAGATTGCATGGTGAAGGAAGATGGAACTCTGTTGCAAGACTTGCAGGACTGAAAAGAAATGGAAAGAGCTGCAGACTGAGATGGGTGAATTATCTCAGACCAGACCTAAAGAAGGGTCAGATAACACCACAGGAAGAAAGCATAATTCAGGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAANTGACAATGAGATCAAGAACTATTGGAGGACCCATTTCAAGAAAAAGGCTAAAAGCCNTTCTGATGCTGCTGAGAAGGCTAGAATCCGTTCCTCAAGGAGGCAGCAATTTCAACAGCAACAACTGCAGTTGAAGCATCAGCAGCAGGTTCAGGTTCAGCAGCAGCTGCAGCAGCAGCAGCAATTCCAATTCAACTTGGACATAAAAGGGATCATAAACTTGCTTGAAGAAAATGATCATAGAGTCCCTTCTACATCTCAAGAGACACAAGAAATGGTTAACATGTGTCCAAACACTTCAGAGCAGCAGGGCTACTTCTACTCTATGTTCAATGTCAGTGACAATGTCTCTGCACCAGAGTCCTCAAACGAAGAAATTCTGTGGGATGGACTGTGGAACTTAGACGATGTTCTTTGCAATTTCAATGCAGCAAGTGCTACAAGCAAAGCNAGTTTACACAATTTAGTCACTCCTTTCAGTTAA 804 0.4428 MYWGVMAGNMGWGVIEEQGWRKGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRXDNEIKNYWRTHFKKKAKSXSDAAEKARIRSSRRQQFQQQQLQLKHQQQVQVQQQLQQQQQFQFNLDIKGIINLLEENDHRVPSTSQETQEMVNMCPNTSEQQGYFYSMFNVSDNVSAPESSNEEILWDGLWNLDDVLCNFNAASATSKASLHNLVTPFS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1830 267 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vra8g1830 267 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vra8g1830 267 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Vra8g1830 267 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vra8g1830 267 Gene3D - 79 123 - -
Vra8g1830 267 CDD SANT 24 69 IPR001005 -
Vra8g1830 267 Gene3D - 22 74 - -
Vra8g1830 267 CDD SANT 79 120 IPR001005 -
Vra8g1830 267 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vra8g1830 267 PANTHER MYB TRANSCRIPTION FACTOR 1 260 - -
Vra8g1830 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Vra8g1830 267 SMART sant 74 122 IPR001005 -
Vra8g1830 267 SMART sant 21 71 IPR001005 -
Vra8g1830 267 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 260 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra8g1830 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1830 Vra-Chr8 35651245 35652604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1830 17 266 MYB Transcription Factor Family AT4G13480 52.672 5.90e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1830 Myb_DNA-binding 8.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1830 K09422 - gmx:100813935 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1830 8 35651245 35652604 Vra8g1830 8 35651245 35652604 ECH