Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1819 ATGTTGCAGGATGTTTTTGATCAGCCACTTCCACCAAAGGCCGAACCGCAACAGCAAGTCCCCATTGAAGAAATTTCAAGCCCTTTTAGTAGTGCTCGAATTTTCGAATTTTGTAACGCTGAATTTTTCCCAGAGGCTTTGCCAAATTCTGAGGTTACTTCCAGCTCAAACTGTTGCTATGAGGAGAACTCCTCGTATGCCACAACAAACAAATCTTTAACTGTAGATGTAGAAAATAAATTGAATAGCAATAGCAACACAGTCACCACACCAACTAGCATTACCACCACCACCAACAACAACACAACCAACAGTAGTAACCTATCTATTATCTTAGACCCCCAAGATGAAATGGACAACAATGACATCGCTGCCTCCATAGACTTTTCACTATCTCCATCTTTCAATGTTCCTCCATTTCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTATGTGCAGCCTCAGGTCCAATTACCAGCATTTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACTGACCCCGTTGCTCCTCCACTTATGGGGGCTCCATTACCTTCTGTATTTGAAGAGGATTGCATATCTTCTGTTTCTTCTTATGTGCCTCTCAACCCTTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCATACATGCCTACCGGCCCCCTTACTAGTGCCTTATCAACGGATAGTTCTGGATATTTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGGCACTTGGTACTGAGAGTCAGCAACTAGTTCCCGGGGGTGGTAGTTCTGCCACTCTAACACCTGAAATTTCTAACTTAGAGGACTCCTCATTCAAAGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGACAGCCGACCTCGGGTTCGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAAACCAATAGAACTACTAGTAGCAATCATGAAGATGATGACGAAGAAGAAGTAGTTGTGAAGGATGAAGATGATATGGTTGATTCCTCAGATATTTTTGCTCATATCAGTGGGGTAAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1257 0.4248 MLQDVFDQPLPPKAEPQQQVPIEEISSPFSSARIFEFCNAEFFPEALPNSEVTSSSNCCYEENSSYATTNKSLTVDVENKLNSNSNTVTTPTSITTTTNNNTTNSSNLSIILDPQDEMDNNDIAASIDFSLSPSFNVPPFLPVTSQQEQFDFSYVQPQVQLPAFSVVEGFSQYPTDPVAPPLMGAPLPSVFEEDCISSVSSYVPLNPSSPCTYLSPGMPPYMPTGPLTSALSTDSSGYFGGNILLGSELQTQELEYQGENGRMYCTDSIQRVFNPPDLQALGTESQQLVPGGGSSATLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEDDDEEEVVVKDEDDMVDSSDIFAHISGVNSFKCNYSIQSWI* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1819 418 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
Vra8g1819 418 MobiDBLite consensus disorder prediction 355 377 - -
Vra8g1819 418 Pfam CCT motif 320 362 IPR010402 GO:0005515
Vra8g1819 418 PANTHER CCT MOTIF FAMILY PROTEIN 22 418 - -
Vra8g1819 418 MobiDBLite consensus disorder prediction 1 22 - -
Vra8g1819 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 418 - -
Vra8g1819 418 MobiDBLite consensus disorder prediction 355 384 - -
Vra8g1819 418 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1819 Vra-Chr8 35563550 35567875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1819 290 369 C2C2-CO-like Transcription Factor Family AT5G24930 38.824 6.13e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra8g1819 CCT 3.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1819 - - gmx:100803778 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1819 8 35563550 35567875 Vra8g1819 8 35563550 35567875 ECH