Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1818 ATGAACGGCAGTTCTAGCGAAAGCAAGACAAGGGACATGGACGGGCAGCTGGCGGGGCTGGGCTACAAAGTTCGCTCATCGGAGCTCTGTCAAGTGGCTGAGAATATGGAACGTTTAGAGAACGCCATCAACACTGTCAACTCATCCAGGGACATTTCTCAAGTAGTCTCCGACGCACTCCTCTACGATCCTTCCAACATAGGTTTAGGTTCCTGGGTCGACACGCTTCTCTCCGAGCTCGACCAAACCGTCTCGTTGCCCTACGATCTATCTTCGGACCTACCCGATTTGCCCACGGATCCGAATCGCCAACTGGGGATGGTAACCACCGTTGAAGAAGACTCCGGGATAAGACTCGTTCACACGCTCATCACGTGTGCGGATTCCGTGCAACGTGGCGACCTCGCATTCGCCGGCTCCCTCATCGAGAGCATGCAGGCACTGCTGGCTCACGTGAACACCTCCTGCGGCATCGGTAAGGTCGCCGGCTACTTCATCGACGCCTTACGCCGCCGAATCTCGTCTCCGCAAAGCGCAGCGTTTCCAACCTCCCCCTACGAGAACGACGTTCTCTACCACCACTACTACGAGGCCTGCCCCTACCTAAAGTTCGCGCACTTCACTGCGAACCAGGCGATCCTTGAAGCGTTCAACGGCCACGACTGCGTCCACGTCATCGATTTCAACCTGATGCAGGGGCTCCAGTGGCCGGCTCTCATACAAGCGCTAGCACTCCGCCCTGGAGGTCCGCCGTCGCTGAGACTGACCGGCGTGGGACCTCCCTCGCCGGACGAGCGAGACACACTGCGCGAGATCGGCGCGCGGCTGGCGGAGCTGGCGCACTCGGTGAACGTGCGGTTCACGTTCCGCGGAGTGGCAGCGTGGCGGCTGGAGGACGTGAAGCCGTGGATGCTGCAGGTGAGTCCGAAGGAGGCTGTGGCAGTGAACTCGATCATGCAGCTACACCGCGTGCTCGGTTCGGGAATCGATACGGTTCTCGGCTGGATCCGAGGTCTAAACCCAAAGATCGTGGCGGTTGTGGAGCAGGAAGCGAACCACAACGGGGAAAGTTTTCTGGAGCGGTTCACGGAGGCTCTACACTACTACTCGACCGTCTTCGACTCGCTGGAAGCGTGTTCGGTGGAGCCGGACAAGGGTCTGGCGGAGATGTACCTGCAGAGGGAGATTTGCAACGTGGTGTGCTGCGAGGGACCGGCGCGATTGGAGCGGCACGAGCCGCTGGTGAAATGGAGGGAACGGCTGGGCAGAGCCGGATTCAGGCCCTTGCATTTGGGTTCGAACGCTTACAAACAAGCGAGCATGCTGTTGACTCTGTTCTCAGCCGAGGGTTACTGCGTGGAAGAGAATCAAGGGTGTTTGACTCTGGGTTGGCATAGCCGGCCCCTGATTGCGGCTTCGGCTTGGCAAGCCGCGCCCCTAAGAGAGGGTGAAACGGTGCGTTTCCAGCGCTGA 1473 0.5947 MNGSSSESKTRDMDGQLAGLGYKVRSSELCQVAENMERLENAINTVNSSRDISQVVSDALLYDPSNIGLGSWVDTLLSELDQTVSLPYDLSSDLPDLPTDPNRQLGMVTTVEEDSGIRLVHTLITCADSVQRGDLAFAGSLIESMQALLAHVNTSCGIGKVAGYFIDALRRRISSPQSAAFPTSPYENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFTFRGVAAWRLEDVKPWMLQVSPKEAVAVNSIMQLHRVLGSGIDTVLGWIRGLNPKIVAVVEQEANHNGESFLERFTEALHYYSTVFDSLEACSVEPDKGLAEMYLQREICNVVCCEGPARLERHEPLVKWRERLGRAGFRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQAAPLREGETVRFQR* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1818 490 ProSiteProfiles GRAS family profile. 110 476 IPR005202 -
Vra8g1818 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 9 480 IPR005202 -
Vra8g1818 490 PANTHER OS05G0574900 PROTEIN 9 480 - -
Vra8g1818 490 Pfam GRAS domain family 119 476 IPR005202 -
Vra8g1818 490 Gene3D - 12 80 IPR038088 -
Vra8g1818 490 Pfam Transcriptional regulator DELLA protein N terminal 14 83 IPR021914 -
Vra8g1818 490 SMART DELLA_2 14 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1818 Vra-Chr8 35561079 35562808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1818 5 476 GRAS Transcription Factor Family AT1G14920 47.013 6.10e-158 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra8g1818 GRAS 1.5e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1818 K14494 - gmx:100803245 776.548