Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1803 ATCTTTGCAGTAACTCTGGCAAATCCTTGGTGGACAGGTCAGGGAGGGTTATCTGGGGTTGACCCAGGAACCCATTCACCTGGCCTAAGCAAACGCCACACAGACCTTGCAATCAATGAAACCAGTGGTGGCCATAATATAGAAGAAGATGAAGACAATAGAGATGAACCGAGAGAAGGTGCAGTTGAGGTTGGAACTCGCAGACCAAGAGGAAGACCTCCCGGATCCAAAAACAAGCCAAAACCACCAATTTTCGTAACAAGGGACAGCCCAAACGCCCTGAGGAGTCATGTGATGGAGATAACTGGAGGAGCTGATGTTGCCGAAAGTGTAGCCCAATTCGCAAGAAGGCGTCAGCGTGGGGTTTGTGTGCTCAGTGGGAGTGGCTCGGTGGCCAATGTTACTCTTAGACAACCTGCTGCTCCTGGAGCTGTGGTGGCACTTCATGGGAGGTTTGAGATTTTGTCCCTCACTGGGACCTTTTTACCTGGTCCTGCTCCTCCAGGATCCACAGGACTCACAGTGTATCTTGCTGGAGGCCAGGGCCAAGTACTAGGAGGGAGTGTGGTTGGGCCTCTAGTTGCCACAGGACCAGTGATGGTGATTGCTGCAACTTTTTCTAATGCAACATATGAGAGACTTCCACTTGATGAAGATGATGAAGGGCCCAGTTCCGCCGCCGCGGTACAAGGAGGAGGATCGCCACCGCCACTTGGAATTGGAAGCGGTGGGGGTGGGGGTGGGCAATTGCAGGGTGGGATTCCAGATCCAACATCTTTGCCTTTGTATAATCTTCCACCAAATGGAGGCGGGGGCCAAGTGGGGCATGAAGCCCTTGCTTGGGGTCATGGACGGGCACCTTTCTGA 867 0.5294 IFAVTLANPWWTGQGGLSGVDPGTHSPGLSKRHTDLAINETSGGHNIEEDEDNRDEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVLGGSVVGPLVATGPVMVIAATFSNATYERLPLDEDDEGPSSAAAVQGGGSPPPLGIGSGGGGGGQLQGGIPDPTSLPLYNLPPNGGGGQVGHEALAWGHGRAPF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1803 288 MobiDBLite consensus disorder prediction 12 91 - -
Vra8g1803 288 MobiDBLite consensus disorder prediction 44 66 - -
Vra8g1803 288 PANTHER DNA-BINDING PROTEIN-LIKE 39 288 - -
Vra8g1803 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 288 IPR014476 GO:0003680
Vra8g1803 288 CDD DUF296 95 206 IPR005175 -
Vra8g1803 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Vra8g1803 288 Gene3D - 94 221 - -
Vra8g1803 288 ProSiteProfiles PPC domain profile profile. 91 228 IPR005175 -
Vra8g1803 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 219 - -
Vra8g1803 288 MobiDBLite consensus disorder prediction 215 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1803 Vra-Chr8 35383791 35384967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1803 6 288 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.204 5.72e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1803 - - var:108341460 486.493