Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1793 ATGGATCTTGCAAGCAGAAGATACTTGATTTATGTCTCACAACATGTGTCACAATCGGAAGCACTTTCTCCAGTCACAAGTCCAGGGGGTTCGTTCTTTCATCCTCATCAGCATTCTTCTAGCACCAGTTTTCCCATAATTGCGATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACAGAATTGATATTCTAAGACGTTTTTCTCCATCTAGAAGGCGTGAAGATCCATCACCAATGTACTCACCAGGCACAGAAGCTCGCGGACTGGATGAGGCAATGATCCGGTTAATCCCTGTGATTCAATACAAGACACAAGGGGATGATAGAGAATCTGGAGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAACTCAGGATTATACCAAATTGCAGTCATGTGTTTCACATCGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTCTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACGTGGAGCAGCTTCTTGCACTAAGGTCTTCTTCCCCTCCGGATCAAACTCCGACTAGGGAAAACCACATAGGAGGAGATGAAGATTTTGTTGTAATTGAATTAGGTAATATCCATGACAGAAGCCAAAATTTGCGAGAGAGAGGAAATGGTTTGGAGTTACCATCACCAACATCTCTTATTAGTTCTTGTACGCCAAGGAAATTGGAACAAGGAAATGTGCAGAAGAAAGCAATGAAACTGCATAAAGTGACGAGCATGGGAGATGAGTGTATTGATATTAGAGCTAAAGATAACCAGTTCTCAGTGCAACCAATCAGAAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTGCAGAACAGGCAAGTCAATGAAGTCAGCACCACCGAAGGCTGCAGTGGTAGTGCTAGCAACAGAGTCAAGAGATCATTCTTTTCCTTCGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGAACCCTGA 1077 0.4336 MDLASRRYLIYVSQHVSQSEALSPVTSPGGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPMYSPGTEARGLDEAMIRLIPVIQYKTQGDDRESGECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHVEQLLALRSSSPPDQTPTRENHIGGDEDFVVIELGNIHDRSQNLRERGNGLELPSPTSLISSCTPRKLEQGNVQKKAMKLHKVTSMGDECIDIRAKDNQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSTTEGCSGSASNRVKRSFFSFGHGSRSRSSVQPVSLEP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1793 358 SUPERFAMILY RING/U-box 122 179 - -
Vra8g1793 358 PANTHER RING-H2 FINGER PROTEIN ATL16 32 357 - -
Vra8g1793 358 SMART ring_2 131 172 IPR001841 -
Vra8g1793 358 CDD RING-H2_PA-TM-RING 130 173 - -
Vra8g1793 358 Pfam Ring finger domain 130 173 IPR001841 -
Vra8g1793 358 PANTHER RING-H2 FINGER PROTEIN ATL16 32 357 IPR044600 GO:0016567|GO:0016740
Vra8g1793 358 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Vra8g1793 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1793 Vra-Chr8 35264266 35266150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1793 35 358 C3H Transcription Factor Family AT1G04360 53.371 1.99e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1793 - - gmx:100775286 568.54