Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1792 ATGGATGAGGAAGGATCAAGGGGAAAAACCAAGGAGGAGCCTGGAGATGTCCGTTACCGGGGGGTTCGCCGGCGGCCCTGGGGGAAGTTCGCCGCCGAGATTCGAGACTCCACCAGACAAGGCCAAAGGGTGTGGCTGGGAACTTTCAACACGGCGGAGGAAGCAGCCAGAGCCTATGATAGAGCTGCTTATGCCATGAGAGGTCCATTCGCAATTCTGAACTTCCCTGAGGAGTACCCTATGACTGCTGGTGGTGCCACTAATGCCGCCACTCATTCCTCTGTTGCTTCATCGTCCTCATCCTCTTCCTCCAGGCATGCAAATGTGGAAGCCAGAGGAAGAAGTGAGCAAGGAAGACAAGTGTTTGAGTTCGAGTACTTAGACGACAAATTGTTGGAGGAGCTTCTAGACTTTGAGGACAAAAAGAAAAGGGGCCCCTGA 441 0.5351 MDEEGSRGKTKEEPGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGPFAILNFPEEYPMTAGGATNAATHSSVASSSSSSSSRHANVEARGRSEQGRQVFEFEYLDDKLLEELLDFEDKKKRGP* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1792 146 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vra8g1792 146 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vra8g1792 146 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vra8g1792 146 MobiDBLite consensus disorder prediction 1 20 - -
Vra8g1792 146 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vra8g1792 146 MobiDBLite consensus disorder prediction 86 108 - -
Vra8g1792 146 MobiDBLite consensus disorder prediction 81 116 - -
Vra8g1792 146 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vra8g1792 146 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vra8g1792 146 PANTHER DNA-BINDING DOMAIN 7 140 IPR044808 GO:0003700|GO:0009873
Vra8g1792 146 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vra8g1792 146 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vra8g1792 146 PANTHER ETHYLENE RESPONSE FACTOR 7 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1792 Vra-Chr8 35254517 35255201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1792 18 143 AP2-EREBP Transcription Factor Family AT3G23230 62.698 4.79e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g1792 AP2 1.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1792 - - gmx:100775830 213.772