Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1790 ATGGATATGGATTCCACCTCCTTCTTCAATTCACCCTCTTCCGATTTCTCCTCCGAATCTTCCTCTCCGGAGGCCTTCTCATGGGAGGGCTACCTCCCCTTCAACGAGAACGACCCGGAGGAGATGCTCCTCTACGGCATGATCACCGGCGCCACCACAGTCGAGCGCACGGCCGACCGAGCGGGCTCTGAGGAGAGTGAGGCGGTGCAAAAGGAGAAGTCCTACCGCGGAGTGCGGCGGCGCCCGTGGGGGAAGTTTGCGGCGGAGATTAGGGACTCCACACGGCATGGGATGAGGGTGTGGCTTGGGACATTCGACAGCGCGGAAGCCGCGGCTTTGGCTTACGACCAAGCAGCGTTTTCCATGCGTGGCCCCGCCGCAATTCTGAACTTCCCCGTTGATATCGTTAGAGAATCGCTGAGGGAGATGAACTACACGGTGGACAGCAATGAAGAAGGGTGCTCCCCTGTTGTCGCTCTCAAGAGGAAACACTCGTTGCGGAGGAAAATTGGTGTGAAGAAAAACAACAAACAGAGTAGCGTAGACAATGCGGTCGTGTTTGAAGACCTTGGTCCTGACTACTTGGAACAGTTGTTGATGTCCTCTGATCGTATTCCCTCCTCCTTCTGA 630 0.5619 MDMDSTSFFNSPSSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMITGATTVERTADRAGSEESEAVQKEKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGPAAILNFPVDIVRESLREMNYTVDSNEEGCSPVVALKRKHSLRRKIGVKKNNKQSSVDNAVVFEDLGPDYLEQLLMSSDRIPSSF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1790 209 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Vra8g1790 209 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Vra8g1790 209 MobiDBLite consensus disorder prediction 1 25 - -
Vra8g1790 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 201 - -
Vra8g1790 209 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Vra8g1790 209 CDD AP2 73 134 IPR001471 GO:0003700|GO:0006355
Vra8g1790 209 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Vra8g1790 209 MobiDBLite consensus disorder prediction 1 33 - -
Vra8g1790 209 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Vra8g1790 209 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Vra8g1790 209 PANTHER DNA-BINDING DOMAIN 27 201 IPR044808 GO:0003700|GO:0009873
Vra8g1790 209 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1790 Vra-Chr8 35204800 35205863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1790 32 203 AP2-EREBP Transcription Factor Family AT3G23240 61.326 2.63e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g1790 AP2 5.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1790 K14516 - gmx:100790598 322.013