Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1788 ATGGAACGTGCGGTTCTTGATGGTATCATCAATAGGCTGCTCGAAGTCAGAAACAGGCCCGGCAAACAGGTCCAACTTTCTGAGCCTGAAATCAAGCAGCTTTGTCTTGTCTCCAGGGATATCTTCTCCAACCAGCCCAACCTCTTGGAACTCGAGGCACCCCTCAAGATCTGTGGAGATATCCATGGTCAATATTCTGACCTTCTGCGACTTTTTGACTACGGTGGATTGCCTCCTCGTTCTAATTACTTATTTTTAGGGGACTATGTTGATCGTGGGAAGCAAAGCTTGGAGACTATATGTCTCCTTCTGGCTTATAAAATAAAATATCCTAATAACTTCTTTCTTCTGAGGGGCAACCATGAATGTGCTTCTATAAACCGAATCTATGGATTTTATGATGAGTGTAAACGAAGATTCAATGTGAGGCTTTGGAAAGTGTTCACAGAATGTTTCAACTGCTTGCCGGTAGCAGCTCTGATTGATGAAAAAATACTCTGCATGCATGGTGGACTCTCTCCTGACTTACACAATTTCAATCAGATAAAGAATTTGCCGCGTCCTACTGAAGTACCTGAAACTGGTCTACTATGTGACCTCCTTTGGTCTGATCCTAGCAGTGACATTCGGGGTTGGGGAGAAAACGAACGTGGAGTTTCCTATACTTTTGGTGTTGACAGGGTCACCGAATTCCTTCAGAAGCATGATCTTGATTTGATTTGCAGGGCCCATCAGGTTGTGGAAGACGGATATGAATTCTTTGCTGACAGACAACTTGTGACTATCTTCTCGGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCAATGATGACCGTTGATGAGTCACTCGTTTGCTCTTTTCAAATATTGAAGCCTGTAGAAAAAAAGCCTAATAAGTTTCGCTTTGGGAGCACAACTACAGTTAAACCTACTACTCCAACAAAAGCTAAGCAATCATTTTTTGGTGCTAAAGCTTGA 984 0.4289 MERAVLDGIINRLLEVRNRPGKQVQLSEPEIKQLCLVSRDIFSNQPNLLELEAPLKICGDIHGQYSDLLRLFDYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPNNFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTECFNCLPVAALIDEKILCMHGGLSPDLHNFNQIKNLPRPTEVPETGLLCDLLWSDPSSDIRGWGENERGVSYTFGVDRVTEFLQKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMTVDESLVCSFQILKPVEKKPNKFRFGSTTTVKPTTPTKAKQSFFGAKA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1788 327 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vra8g1788 327 Gene3D - 1 305 IPR029052 -
Vra8g1788 327 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 320 - -
Vra8g1788 327 Pfam Calcineurin-like phosphoesterase 56 246 IPR004843 GO:0016787
Vra8g1788 327 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vra8g1788 327 SUPERFAMILY Metallo-dependent phosphatases 16 302 IPR029052 -
Vra8g1788 327 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vra8g1788 327 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
Vra8g1788 327 CDD MPP_PP1_PPKL 5 294 - -
Vra8g1788 327 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vra8g1788 327 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vra8g1788 327 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vra8g1788 327 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vra8g1788 327 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vra8g1788 327 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vra8g1788 327 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1788 Vra-Chr8 35175433 35179798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1788 33 239 Calmodulin-binding Proteins AT5G63870 32.258 1.47e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1788 K06269 - gmx:100791655 622.468