Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1784 ATGAGTAAATACCTCCAGCAAGAGTACGTCGTTTCGGAGGAGATCGGCCGGGGAAGATTCGGTACCGTTTACCGATGCTCGTCGGCGGACTCCGGCGAGTCCTACGCCGTTAAATCCATCGACAAGGTAGCCATAAGTGCCAGCGGAGACTCCCTGGACTCCCGATGCCTCTTTACCGAGGCCAAGATCGTTCAGCTGCTCTCCCCTCACCCTCACATAGTCACTATTCATAGCCTCTACGAAGACGAAACGCACCTCCACATGATTCTCGACCTGTGTTACGAACCCACGTTTCATCACCAGGTCATGCTGGAACATGAAGCTGCTTCAGTGATGTGGCAGCTCATGAAAGGCGTGGCCCACTGCCACCGTCTTGGCGTGGCCCACCGAGACATAAAGCCCGACAACATTCTTTTCGACAAGGACAATCGGCTGAAGCTAGCCGATTTCGGCTCGGCTGAGACTTTCAAAGAGGGCGAGTCCATGAACGGAGTGGTGGGGACACCGCATTACGTGGCGCCGGAGGTCCTCACCGGAAGGGATTATAACGAGAAAGTTGACGTGTGGAGTTGTGGTGTGGTTTTGTATCAAATGTTGGCGGGGTTTTTGCCCTTTGGAGGTGATTCCCCTGTGGAGATTTTTGAGTCTGTTATGCGCTCCAGTTTGAGACTCCCAACCCGGGTTTTCTCTTCTGTTTCACCTGCCGCCAAGGATCTCCTTCGTAGAATGTTATGTAGAGAAGTCTCTAGAAGGTTCTCTGCTGAAGAAGTTCTGAGACACCGGTGGTTTAGCATTATTGAACAGAGTGACTGA 813 0.5252 MSKYLQQEYVVSEEIGRGRFGTVYRCSSADSGESYAVKSIDKVAISASGDSLDSRCLFTEAKIVQLLSPHPHIVTIHSLYEDETHLHMILDLCYEPTFHHQVMLEHEAASVMWQLMKGVAHCHRLGVAHRDIKPDNILFDKDNRLKLADFGSAETFKEGESMNGVVGTPHYVAPEVLTGRDYNEKVDVWSCGVVLYQMLAGFLPFGGDSPVEIFESVMRSSLRLPTRVFSSVSPAAKDLLRRMLCREVSRRFSAEEVLRHRWFSIIEQSD* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1784 270 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 265 - -
Vra8g1784 270 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1784 270 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Vra8g1784 270 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vra8g1784 270 Gene3D Transferase(Phosphotransferase) domain 1 97 270 - -
Vra8g1784 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Vra8g1784 270 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 4 265 - -
Vra8g1784 270 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1784 270 CDD STKc_CAMK 9 262 - -
Vra8g1784 270 SUPERFAMILY Protein kinase-like (PK-like) 4 264 IPR011009 -
Vra8g1784 270 PIRSF ILK 3 262 - -
Vra8g1784 270 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1784 Vra-Chr8 35139117 35140112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1784 9 263 EF-hand Containing Proteins AT1G50700 38.403 1.49e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra8g1784 Pkinase 7.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1784 - K08794 gmx:547731 467.618