Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1767 ATGAATTCAGAGAAGCCAGTCAGCCCTGAGAATTTAAGTGATGAAAATGATCAAGAAGAAGCACAAGATGACACTGGTGGAACTAAACGCTCTTATGAGTGCACATTCTGCAAAAGAGGTTTCACAAACGCTCAAGCTTTGGGGGGTCATATGAATATCCATAGGAAAGACAGGGCCAAGGCCAAGCAATTCACACTTGACGCTTCACCTTCAATTAACAAATTCAACGGTCATCAATCCATAGTCTTTCCTTTTGTCTCAGAAGCTTTGAACCAACAACACGCAAGGCCTAATTACTCCGTTTTGGAGTCTCAGAGGAACTGTGACAAACACTTTCGTCCGCCACCACCTGCAAGTGCCTTTTATTATGAGTTTTATGAGCCAAGGTCACGGTCTTTGAGTTTGAACCAAGAGCTTCGTGGTGCCAACCTCAGTCTCCAAATTGGTCCAAGTCATCATGTGGGTGATGATATTCATCAAGCGAGAGGAAACCAGAAAGATAGTGAAGTGGACTTGGAGCTAAGACTTGGCCATCATCCATACTGA 546 0.4396 MNSEKPVSPENLSDENDQEEAQDDTGGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTLDASPSINKFNGHQSIVFPFVSEALNQQHARPNYSVLESQRNCDKHFRPPPPASAFYYEFYEPRSRSLSLNQELRGANLSLQIGPSHHVGDDIHQARGNQKDSEVDLELRLGHHPY* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1767 181 Pfam C2H2-type zinc finger 32 56 - -
Vra8g1767 181 MobiDBLite consensus disorder prediction 1 30 - -
Vra8g1767 181 PANTHER OS07G0101800 PROTEIN 13 180 - -
Vra8g1767 181 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 180 - -
Vra8g1767 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vra8g1767 181 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Vra8g1767 181 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vra8g1767 181 Gene3D Classic Zinc Finger 13 80 - -
Vra8g1767 181 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1767 Vra-Chr8 34938723 34939268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1767 23 177 C2H2 Transcription Factor Family AT3G09290 36.478 8.90e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1767 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1767 - - vun:114191365 337.806