Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1764 ATGAGAGCTAAGAGTTTGATAAGTAAAAAGCAGATAAGCCTAAGATTGAGAAAAATGATTAAGTGTATATGCTCTGGGGAGCAGTTAAAGGTGGACGAATTAGGTTACTCATCGGAGTCCTTAGCAACCAGAGATTATTCAGCAAGTGGTGGCTTTTCTCGTCCTGGTGAAAATGACACAAAGATTGACAATACCAACATCGAAGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATGTCGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTACTGTTGTTCCCAAGATTAAAGTTTCCATATCTAGAAGATCTGAGCCTAATAGACGCCGTTCGCAAAGTGATGCTCAGCCTCCTATGTCAATGCATGCTGTTACTTTAATTCTTGAAGCTGTCTTTCTCAAGGCCAAATCGTTGCAGGCTCTAGGAAGGTTTCAAGATGCTGCCCAGTCATGCAAGACGATTTTAGACACTGTTGAATCAGCTTTACCAGAAGGGTGGCCTGAAAACTTAGTTTCGGACTGTAAACTACAAGACACAGTGGCAAATGCTGTGGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAAGACGTTATCTCATCGTTTAGGAGGGCCCTTCTTTATCATTGGAATCTTGGCATTAAAGCCAGCGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAGCAACTTAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATTTATTCTTGGATACATTGAATGGGACCCTTCGTTAATTGATCACCTTTCGTTTGCTCTAAGTATTTCTGGGGAATTCATGACTCTAGCTCAGCAGGTTGAGGAATTGCTTCCTGAAAACATGGACAGAAAAGAAAGATTCTATACTTTAGCTCTTTGTTACTGTGGAGAAGGTGAACATACGACTGCTTTGGATCTTCTAAGGAACTCTCTGAATCACAGAGAGAACTCAGACTGCATAAAGGAGCTACTTCTAGCTTCAAAAATTTGTGCAGACAAGAAGATTTACACTGAAGAAGGAATCAGATATTCTTTCAAAGCCATTTCTCAGCTGAATGGAAAGTGCATGCAGATGGCAGCTATTGTAAATTGCTTTCTAGGCGTTCTACTGTCATCAAAATCCAGGTCAGCCGCTTCTGAATCAGAGAAGAGTTTTTTGCAGTCTGAAGCACTCAGTGCTCTAAAGGATTCGGAGAGAACGATGAGGGAGAGCGATCCTTATATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTGAGCACTGCTATTGATCATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTCAGTGCATATATTCTTTTAGCGCGGATTTTATCTGCTCAACGAAAGTTTGAAGATGCAGAGCTTGTTATCGATGCTGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTAAGGATTGCACAGGGAAAATTAAAGAATGCGGTGGAGACATATACTTTTCTTCTAGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACGGCATGTAAGAAGAGTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTATATGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTGGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAGGGTTTACTTTTTGAAGCTAGAGGTCTTCATCCAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATGTTGATCCCAACCATGTGCCAAGTTTGATATCAACAGCGTGTGTACTCAGACAACTTGGTGGTCAATCATCTTCAATAGTCAGAAGCCTTCTCACTGATGCGTTGCGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGTTCTACAGAGATGATCTGGGGACATCGGCAATGGAAGCCGTTGAATGCTTTGAAGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATCGAACCCTTTAGATAG 2184 0.4176 MRAKSLISKKQISLRLRKMIKCICSGEQLKVDELGYSSESLATRDYSASGGFSRPGENDTKIDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIATVVPKIKVSISRRSEPNRRRSQSDAQPPMSMHAVTLILEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWPENLVSDCKLQDTVANAVELLPELWKLAGSPQDVISSFRRALLYHWNLGIKASARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRSNLEEAVLLLLILLRKFILGYIEWDPSLIDHLSFALSISGEFMTLAQQVEELLPENMDRKERFYTLALCYCGEGEHTTALDLLRNSLNHRENSDCIKELLLASKICADKKIYTEEGIRYSFKAISQLNGKCMQMAAIVNCFLGVLLSSKSRSAASESEKSFLQSEALSALKDSERTMRESDPYIVLHLCLEYAEQRKLSTAIDHAKKLIKLEGGSSVSAYILLARILSAQRKFEDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTACKKSKGNRDRRLEMEIWHDLANVYMALSQWQDAEVCLAKSEAINPYSASRWHTKGLLFEARGLHPEALKSFRKALDVDPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRDDLGTSAMEAVECFEAAAFLEESSPIEPFR* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1764 727 PANTHER PROTEIN NPG1 11 727 IPR043376 -
Vra8g1764 727 PANTHER OS10G0471400 PROTEIN 11 727 - -
Vra8g1764 727 SUPERFAMILY TPR-like 151 370 IPR011990 GO:0005515
Vra8g1764 727 ProSiteProfiles TPR repeat profile. 616 649 IPR019734 GO:0005515
Vra8g1764 727 Pfam Tetratricopeptide repeat 617 649 IPR019734 GO:0005515
Vra8g1764 727 Gene3D Tetratricopeptide repeat domain 449 563 IPR011990 GO:0005515
Vra8g1764 727 SUPERFAMILY TPR-like 475 698 IPR011990 GO:0005515
Vra8g1764 727 Gene3D Tetratricopeptide repeat domain 127 447 IPR011990 GO:0005515
Vra8g1764 727 Gene3D Tetratricopeptide repeat domain 564 724 IPR011990 GO:0005515
Vra8g1764 727 Pfam Tetratricopeptide repeat 466 521 - -
Vra8g1764 727 SMART tpr_5 150 183 IPR019734 GO:0005515
Vra8g1764 727 SMART tpr_5 335 368 IPR019734 GO:0005515
Vra8g1764 727 SMART tpr_5 457 490 IPR019734 GO:0005515
Vra8g1764 727 SMART tpr_5 492 525 IPR019734 GO:0005515
Vra8g1764 727 SMART tpr_5 582 615 IPR019734 GO:0005515
Vra8g1764 727 SMART tpr_5 616 649 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1764 Vra-Chr8 34893647 34897838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1764 16 727 Calmodulin-binding Proteins AT4G28600 52.949 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1764 K21843 - gmx:100789469 1245.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1764 8 34893647 34897838 Vra8g1764 8 34893647 34897838 ECH