LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g1753	ATGGCTCCAACCCCTTCTTCCAAACAAAACTACCCTACCCAGATGAAGACTCCACAGTCCAAGCACCGTCTCAACTTCCATGGCCCCAAATCAGCACTGCAAATACACCCTTCTCCCAACCCGAATTGTGCTGCAAACAAGGAACCCCCTCCTGAACACCCAATTGAAGTAGTTGCCAGAATCCGTGACTACCCAGATCGAAAGGATAAACCTTTATCTGTTCTTCAAACCAGTTCCAACTCGAGTTCTATCCGGGTTCGAGCTGATTTTGGGTACCGGGACTTCACCCTTGATGGGGTTTCTGTGTCTGAGGAAGAGGACCTGGATGTGTTCTATAAAAAGTTTGTGGAGTCGAGGATCAATGGAGTTAAGCTTGGGGACAAGTGCACCATCATGATGTATGGACCAACCGGTTCTGGGAAGAGTCACACGATGTTTGGGTGCTCGAAGCAGGCAGGGATTGTGTATAGGTCTCTTAGGGACATTCTGGGGGATGGGGATAATGCAGATGGAGATTCTAGGGGTGATTCAAGAGAAGAGCATCTCGGGTTGGGGACTTTTGTTCAAGTCACTGTTTTGGAGATTTACAATGAGGAGATTTATGATCTGTTGTCCACCAATGGAGGAGGTGGGGGAGGAGGATTTGGATTTGGCTGGCCTAAGGGGGGTAGTGCTTCAAAGGTGAAACTTGAAGTGATGGGGAAAAAGGCCAAGAATGCTACCTATATATCTGGAAATGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGGAGGATTGTCAAAAGCACACTTTGTAATGATAGAAGCTCCAGAAGTCACTGCATGGTAATCCTTGATGTCCCAACTGTGGGAGGGCGACTAATGCTCGTAGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAATTGGATTTGAGGCCAAAATGCAGACTGCAAAAATCAATCAAGGAAATATAGCGCTGAAGAGAGTGGTGGAGTCCATTGCAAATGGTGATTCGCATGTACCATTTAGGGACAGCAAACTTACCATGCTTCTGCAGGATTCCTTTGAAGATGATAAGTCAAAAATTCTAATGATACTGTGTGCAAGTCCTGATCCTAAGGAGATACACAAGACAATCTCTACACTTGAATATGGGGCAAAAGCAAAATGCATAGTCCGTGGTCCTCATACTCCAGTGAAGGATGAGGAATCCTCTTCTGCTGTCATTTTGGGATCAAGAATTGCTGCAATGGATGAATTTATCTTGAAGCTACAAATGGAAAACAAGCAAAGAGAGAAAGAGCGTAACGAAGCGCACAAAAAGCTTTTGAAGAAAGAAGAAGAAATTGCTGCGCTAAGAAATAAATTGAACCAGGCAGAAGGAAAAGGAACTCCGCCAAGTGAGGAGGAAATTAACTTGAAGGTAAATGAACGCACTCGGCTTCTAAGACAAGAGTTGGAAAAGAAGTTGGCCGAGTGCCAAAGAATGACCAACGAGTTTGTTGAATTGGAGAGGAAGAGAATGGAGGAGAGGATACTACAGCAGCAAGAGGAAGTTGAAACTCTGAGAAGGAGATTAGAAGAAATTGAGTTGCAGCTATCTTGTTCAAGGCAAGGGGGGAATAGTGAGGAAAATGAGTCAAAAGACATGGAATCAAGTGGGTTCATGAGAAGGCTATTGCGTGTTTACAAAAGTGAGGAGGATCCTGGAATGGTGAAGTCAATGGATTTGGACATGGATGACCAAGAACCCCTTGGCAGTGAAATGAACATCGTTGGAGGAGTTATGTGTAGGACTGATTACAATGTTAAGCAAGACTTTTCAAATCTACCTTGTCCAAATACTTTGAATGGTGGAAAAGATGATGCTCATATTTTTGCACCCAACTTTGGCCAAAGGGTATGCCTTAGTACAGTATATGAGGAAGAGGGAGAAGGAGATGAAGACAAAGGGGGTGATGAGGAAGTAGAGAAAGAAGTGATAGAAGAAACCAAGGTATGTAGTGTTGAAAAGCCAAGCGCAGGCTCCTTGGCAACATTAAATCTGTCGAACACAAGTCCAAAGAAAGATGATTGCTGTATCAATGTAGATGACAAGGATCTTGGGCCTTCTAGACTACTGAGAATTCAAAACATATTCACTCTTTGTGGCAACCAAAGAGAGCTGTCCCAGCACATTGGAACTCCACTTCCCACAAAAAAGAGAACCGGTGAAAATTTTGAGTTTTCTCCTGCCAAGACAACTGACAAGGATTCCGTTTTCAAGATCTCTAACAAGGAGAACTTCGAGCCACAAAATGTTCTGGGAAATTAG	2313	0.4384	MAPTPSSKQNYPTQMKTPQSKHRLNFHGPKSALQIHPSPNPNCAANKEPPPEHPIEVVARIRDYPDRKDKPLSVLQTSSNSSSIRVRADFGYRDFTLDGVSVSEEEDLDVFYKKFVESRINGVKLGDKCTIMMYGPTGSGKSHTMFGCSKQAGIVYRSLRDILGDGDNADGDSRGDSREEHLGLGTFVQVTVLEIYNEEIYDLLSTNGGGGGGGFGFGWPKGGSASKVKLEVMGKKAKNATYISGNEAGKISKEIQKVEKRRIVKSTLCNDRSSRSHCMVILDVPTVGGRLMLVDMAGSENIEQAGQIGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKEIHKTISTLEYGAKAKCIVRGPHTPVKDEESSSAVILGSRIAAMDEFILKLQMENKQREKERNEAHKKLLKKEEEIAALRNKLNQAEGKGTPPSEEEINLKVNERTRLLRQELEKKLAECQRMTNEFVELERKRMEERILQQQEEVETLRRRLEEIELQLSCSRQGGNSEENESKDMESSGFMRRLLRVYKSEEDPGMVKSMDLDMDDQEPLGSEMNIVGGVMCRTDYNVKQDFSNLPCPNTLNGGKDDAHIFAPNFGQRVCLSTVYEEEGEGDEDKGGDEEVEKEVIEETKVCSVEKPSAGSLATLNLSNTSPKKDDCCINVDDKDLGPSRLLRIQNIFTLCGNQRELSQHIGTPLPTKKRTGENFEFSPAKTTDKDSVFKISNKENFEPQNVLGN*	771

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g1753	770	PANTHER	KINESIN-RELATED	36	730	IPR027640	GO:0003777\|GO:0007018
	Vra8g1753	770	Coils	Coil	476	532	-	-
	Vra8g1753	770	Coils	Coil	417	462	-	-
	Vra8g1753	770	MobiDBLite	consensus disorder prediction	1	52	-	-
	Vra8g1753	770	Pfam	Kinesin motor domain	77	391	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra8g1753	770	MobiDBLite	consensus disorder prediction	1	21	-	-
	Vra8g1753	770	ProSiteProfiles	Kinesin motor domain profile.	54	391	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra8g1753	770	PANTHER	KINESIN-LIKE PROTEIN KIF22	36	730	-	-
	Vra8g1753	770	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	55	398	IPR027417	-
	Vra8g1753	770	PRINTS	Kinesin heavy chain signature	126	147	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra8g1753	770	PRINTS	Kinesin heavy chain signature	267	284	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra8g1753	770	PRINTS	Kinesin heavy chain signature	290	308	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra8g1753	770	PRINTS	Kinesin heavy chain signature	340	361	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra8g1753	770	Gene3D	Kinesin motor domain	34	394	IPR036961	-
	Vra8g1753	770	SMART	kinesin_4	52	399	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g1753	Vra-Chr8	34788802	34792487	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g1753	109	403	Calmodulin-binding Proteins	AT5G65930	27.742	2.01e-25	111

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g1753	-		K10398	gmx:100779567	1263.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra8g1753	8	34788802	34792487	Vra8g1753	8	34788802	34792487	ECH