Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1742 ATGGATAGATGCTGGTTTAATAAACTAAAGCCAAAAGATAAAACACGGTCTTCAAAAAGCAAGGAAACTACGGGCATTGCAAAAGAAGGGTCAAAAACCCCAACCAATGAAGTAGCACCTTCAAATGTGACCAAACAGAAGGTTGCAGCTGCAAAGCAGTATATAGAAAACCATTATAAGAAACAAATGAAGGACTTGCAGGAGAGAAGGGAACGGCGTAATATGCTAGAGAAAAAGTTGGCAGATGCTGAAGTCTCTGAAGAAGAGCAGAACAATTTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCTTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTCAGAGTATGCCGAGAGAAGGCGACTGGTCATGTATATGCCATGAAGAAACTTAAGAAATCAGAAATGCTTCGCAGAGGCCAGGTGGAACATGTAAAAGCTGAGAGGAATCTACTTGCAGAAGTCGACAGCAATTGCATTGTAAAGCTTTATTGTTCCTTTCAAGATGAAGAGTTCTTATATCTCATAATGGAGTATCTGCCTGGTGGGGATATGATGACTTTGCTCATGCGGAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACCGTCCTAGCCATAGAGTCAATTCATAAACATAATTACATTCATCGGTATACTACTCTATTTTTTTACATGCGTTCCAGAGATATCAAGCCTGACAACTTGCTGCTAGACAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGATTGCAGTAATCTTCAGGAGAAGGACTTCTCTATTGGAAGCAACAGAAGTGGAGCCCTTCAGAGTGATGGACGCCCTTTGGCTCCTAAAAGAAGCCAACAGGAGCAACTCCAACATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTTGGAACACCTGACTATATTGCCCCCGAAGTCCTTCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTCTAGGAGCAATAATGTATGAAATGCTTGTGGGGTACCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAAATTATTTAAAATTTCCTGAAGAAGTTAAACTTTCAGCAGAGGCCAAGGATCTTATTAGTAGACTCCTTTGTAATGTTGAGCAAAGGCTTGGAACGAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAACGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCTTGGAGAAAGATGCTGTCGTCTAAAGATGTTAACTTCGTTGGGTACACATTTAAGAACTTTGAAATTGTAAATGATGATCAACTACCTGAAATTGCTGAATTGAAGAAGAAGAGCACAAAAACTAAGCGACCATCTATCAAGACCCTATTTGATGATGAATCCGCAACGGCTGCCAATCAACCTGCCCAAGGGAGCTTCTTAAAACTCTTACCTACTCAACGTGAAGTTCCAGTGAAGAGTGAATCTCAGTGA 1671 0.4075 MDRCWFNKLKPKDKTRSSKSKETTGIAKEGSKTPTNEVAPSNVTKQKVAAAKQYIENHYKKQMKDLQERRERRNMLEKKLADAEVSEEEQNNLLKYFEKKEREYMRLKRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEFLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRYTTLFFYMRSRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSIGSNRSGALQSDGRPLAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRNYLKFPEEVKLSAEAKDLISRLLCNVEQRLGTKGADEIKAHPWFKGVEWDKLYQIKAAFIPEVNDELDTQNFEKFEEVDNQTQPSSKSGPWRKMLSSKDVNFVGYTFKNFEIVNDDQLPEIAELKKKSTKTKRPSIKTLFDDESATAANQPAQGSFLKLLPTQREVPVKSESQ* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1742 556 MobiDBLite consensus disorder prediction 27 45 - -
Vra8g1742 556 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vra8g1742 556 Gene3D Phosphorylase Kinase; domain 1 446 456 - -
Vra8g1742 556 Gene3D Phosphorylase Kinase; domain 1 115 200 - -
Vra8g1742 556 ProSiteProfiles Protein kinase domain profile. 117 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1742 556 Gene3D Transferase(Phosphotransferase) domain 1 201 277 - -
Vra8g1742 556 Gene3D Transferase(Phosphotransferase) domain 1 326 445 - -
Vra8g1742 556 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 39 530 - -
Vra8g1742 556 SMART serkin_6 117 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1742 556 MobiDBLite consensus disorder prediction 1 45 - -
Vra8g1742 556 MobiDBLite consensus disorder prediction 289 308 - -
Vra8g1742 556 SMART pkinase_C_6 428 492 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra8g1742 556 ProSiteProfiles AGC-kinase C-terminal domain profile. 428 500 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra8g1742 556 Coils Coil 59 93 - -
Vra8g1742 556 CDD STKc_NDR_like 115 491 - -
Vra8g1742 556 MobiDBLite consensus disorder prediction 1 26 - -
Vra8g1742 556 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 530 - -
Vra8g1742 556 Pfam Protein kinase C terminal domain 446 490 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vra8g1742 556 Pfam Protein kinase domain 119 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1742 556 MobiDBLite consensus disorder prediction 525 540 - -
Vra8g1742 556 MobiDBLite consensus disorder prediction 524 556 - -
Vra8g1742 556 SUPERFAMILY Protein kinase-like (PK-like) 91 479 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1742 Vra-Chr8 34696839 34704245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1742 3 554 AGC Kinase Gene Family AT3G23310 80.901 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vra8g1742 Pkinase 1.7e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1742 K08790 - gmx:100783095 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1742 8 34696839 34704245 Vra8g1742 8 34696839 34704245 ECH