Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1739 ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACACCGAAGGAATCAAAAGCCTTCACAGAGACGGTGCAGGCCTTGAGTGGAGGGACAAAGATGCGAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCATCTTTATAATGTTGCGAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATATCGTCCTGGTCGTCATGGTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCTTTGAAAGTATTATTAAGTTACTTCTCATGCATGGCGCTAATCCTTTAATACTAAATGATGATTGTTTAACTGCTCTGGAGGTTGCCAGAGCCAAAGGACATGGTGGTGCTGTTCGTACAATTGAGAGTCATCTGTGCTTGTTCTCCGGTTGGTTACGTGAGCTTCATGGACCTGAGTTTCTAGAAGTAGTGGCTCCTCAGTTGTTATCTAGAAAAGTTTGGGTGGTTGTTTTACCAGTGGGCTCCCGAACTCTTACCAAACCTTACAAGTTGGAGCTTGCCATATATTCTAATTTGCAGGACGCACAACCACGTACAGTTATTGCACTGTGGAAGGCCAATTTACATCCAAAGATACACCAGTCTGATCCGTCAGTTACAATTGTTGATCAAACTACTAAAACACGTGTTAGACTTGGGCCTGCAAGTGAGAATGACAAGCAACAACTTGCATTTTTTTCTAATGCTTGCAAAGGAATTCCTCAGGCAAGTCCGGCATTCTTGCAAAACAATGCGCCTACAGGTCCACCCACAGCGCCACCAGCTGTAGAAGACACAGAGTTGGCTATGGCCATCAATGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCATCTTTTCCTGATACACAACCAAACTCTGATGCAAGCTCTTCAAGCACTGCAGTGAATACAGGCAATCATGGTTTTCTTGGCACACCAAATTCAAATACAAGTGAAAGTGAGCCGGTGCAAGAAACTAAAACTGGTGGCAATGGTGATCACCACCAAAGCCATGTCAATGCTAGTGAATTGGAATTCAATCCATCGGCTCCACCAATCGTGGGTGATATTCCAACTGATGGTCCCATTCAGTATCCATCAATTGATTTAAGCCCTGTTGATATGGCATCTTCAGATGTTGATAAGCTTCCTAATGGAGAAGGAAAAACTGCAAGTGGAAGTGGCTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCGTGCATTCCCTGTGGTCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCATGTTTGA 1371 0.4486 MGQGQSKDELLYQQVSYGNTEGIKSLHRDGAGLEWRDKDAKTPLIVACMNPHLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFESIIKLLLMHGANPLILNDDCLTALEVARAKGHGGAVRTIESHLCLFSGWLRELHGPEFLEVVAPQLLSRKVWVVVLPVGSRTLTKPYKLELAIYSNLQDAQPRTVIALWKANLHPKIHQSDPSVTIVDQTTKTRVRLGPASENDKQQLAFFSNACKGIPQASPAFLQNNAPTGPPTAPPAVEDTELAMAINASLQSAMQERPSFPDTQPNSDASSSSTAVNTGNHGFLGTPNSNTSESEPVQETKTGGNGDHHQSHVNASELEFNPSAPPIVGDIPTDGPIQYPSIDLSPVDMASSDVDKLPNGEGKTASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRAKIDQIIKLYHV* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1739 456 ProSiteProfiles Zinc finger RING-type profile. 405 444 IPR001841 -
Vra8g1739 456 SMART ring_2 405 443 IPR001841 -
Vra8g1739 456 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Vra8g1739 456 SMART ANK_2a 39 69 IPR002110 GO:0005515
Vra8g1739 456 SMART ANK_2a 75 104 IPR002110 GO:0005515
Vra8g1739 456 PANTHER ROLLING PEBBLES, ISOFORM B 1 456 - -
Vra8g1739 456 SUPERFAMILY RING/U-box 404 450 - -
Vra8g1739 456 MobiDBLite consensus disorder prediction 286 344 - -
Vra8g1739 456 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Vra8g1739 456 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Vra8g1739 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 455 IPR013083 -
Vra8g1739 456 Pfam Zinc finger, C3HC4 type (RING finger) 403 450 - -
Vra8g1739 456 Gene3D - 3 152 IPR036770 -
Vra8g1739 456 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 456 - -
Vra8g1739 456 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Vra8g1739 456 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Vra8g1739 456 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1739 Vra-Chr8 34659984 34664827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1739 395 453 C3H Transcription Factor Family AT3G06140 35.593 3.04e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1739 - - gmx:100789309 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1739 8 34659984 34664827 Vra8g1739 8 34659984 34664827 ECH