Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1737 ATGGTCAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGGCTCCCGAGGAAGATCAAATCCTCACTTCTTACATCCAAAAACACGGCCATGGAAATTGGCGTGCCCTTCCAAAACAAGCTGGCCTGTTAAGATGTGGAAAAAGTTGCAGACTGCGATGGATTAACTATTTGAAGCCTGATATCAAGAGAGGGAATTTCACATCTGAAGAAGAAGAAACTATCATTAAGCTGCACGAGATGCTGGGTAACAGGTGGTCGGCAATTGCAGCAAAATTGCCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCAATTTGAAGAAGAGGTTGCTGAATTTAAATTCCAGAAGAGTCACAAAGCCAAAAATCAGACGTTCTGATTCCAATTCCAGCATCATAACTGAATCAGAAGCTGCCAATTTTAATTTCAGAGAAATGGATTCAACATCTGCATGCACCACTTCTAGTGATTTTTCATCGGTCACAGTTGGTGAAAGCAAAAATATAAAGTGTGAAGACATAGAGTCTCTTGAGACAATGCCCGTGATTGACGAGAGTTTTTGGTCAGAACCTGCAATTGATGAAACACCCTCCATGTCATCACCATCCATGACAATCTCAAATCAGATGCCATTTCAATACCCTTTTACTAACTATGAGGAAACTTTCCAGCAGAGTCATGCTTACGATTCAAAGTTTGATGACGGCATGGATTTCTGGTATGACATATTCACCAGGACCACTGATTCCACAGAATTGCCAGAGTTCTGA 789 0.4144 MVRAPCCEKMGLKKGPWAPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTSEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLNLNSRRVTKPKIRRSDSNSSIITESEAANFNFREMDSTSACTTSSDFSSVTVGESKNIKCEDIESLETMPVIDESFWSEPAIDETPSMSSPSMTISNQMPFQYPFTNYEETFQQSHAYDSKFDDGMDFWYDIFTRTTDSTELPEF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1737 262 CDD SANT 69 112 IPR001005 -
Vra8g1737 262 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra8g1737 262 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra8g1737 262 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra8g1737 262 Gene3D - 69 142 - -
Vra8g1737 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Vra8g1737 262 CDD SANT 16 61 IPR001005 -
Vra8g1737 262 SMART sant 13 63 IPR001005 -
Vra8g1737 262 SMART sant 66 114 IPR001005 -
Vra8g1737 262 Gene3D - 13 66 - -
Vra8g1737 262 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra8g1737 262 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 257 - -
Vra8g1737 262 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vra8g1737 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra8g1737 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1737 Vra-Chr8 34638285 34640540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1737 1 262 MYB Transcription Factor Family AT2G31180 50.368 3.49e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1737 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1737 K09422 - gmx:100807569 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1737 8 34638285 34640540 Vra8g1737 8 34638285 34640540 ECH