Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1732 ATGACAAAGGAACTCATGAAGGTCAACTTGCGGAAGCTCTCAGAAGCCGTCACATGTTATTTGTGCAATAAATGGTTGAGAAACGCAGCCACAATAACAGAGTGCTGTCATAGTTTTTGCAGGGAATGTATAGAAAAGAAGTTAATAGATGAGAAATTAAATCATTGTCCCGTTTGCAATACAGACTTGGGTTGTTCTCCACTCGACAAATTAAGGTCAGATACTCGTAAGCAAGAATTGAGGGACAAAATTTTCCCATTTCAAGATCAAAATGATGAGGAACCTGCCGCCAAATTGTTAGCCAAAATAAAGAAGAACTTAGTTTCTTCATTAAAACCCAATAGAGAAATATCCAAAGCTGGTTTTAGAAAAGTTCTCATTGCCGAAGAAGCAGATATTTCATCTCCCAAACTTGATAAAGTGGAAGGTGATAAGGAAGATGAAAACCAGGGTGACGCTGAATTTGGGGAAGAAGGCGCTACAATTGGATCCGCTAGAAGAGCGAAAGCTGCGGCAAGAATAAAATTCATTTGCTCTGCACAACCTCCGGGACAAGAAAAGACAGAGGGTGATCAGCCTCGAGTTGAAACTTCCAGCGGAACTCTCAAAATCAGAATTCCGAATCTTTCAAAACCAAATACTGGGTTAAGGAATGAAAAGGCTGACATGTTTGAGCCAATAAATAGCCAGGTGGGAGCTGGAAGAAAACGCAAGTCCCGTAGTCATTCCACCATGCAAGAAAATGGTGTCACTTCAGTACTTGTGCACTCTAATGACGATGACCCTCAGGTTGGTATGGTCCAAATCGACAACCATGGTCACAAAACTAATGGTAACCAAAAGGGGTCAATTCCTTCAAGCTCAGATTCAGTAAAACCTATTGTGAGCACCCGAGAAAAAAGACCAAAAATCTCGGAGGACTTGAATTTTCCAGCACCATCTGAAACTGATTCCGACAGTGAAAGCAGCAAAGAGTTTGGTCCAATCTGGTTCTGCTTGGTTGCTGCAGAAGAGAAAAAAGGAAGTGCACCATTGCCACAACTATCTTCGTGCTACCTACGAGTCAAGGATGGCAGTGTAACTGTTTCCTGCATTAAAAAGTATCTCGTGAAGAAGCTTGGTCTTGCTAGCGAAACTGAGGTGGAGATCACATTACAAGGGCAGCCAGTTTTATCATCATTGCAACTGAACAGCTTAGTAGACATCTGGTTGAAAACAGTTCCAAAGAATGAGATTCTGACATCTTTTGGAAGTTCAGCCAAGGATTTTATCATGGTTCTTTCGTATGGTCGAAAGGCTTAA 1302 0.4163 MTKELMKVNLRKLSEAVTCYLCNKWLRNAATITECCHSFCRECIEKKLIDEKLNHCPVCNTDLGCSPLDKLRSDTRKQELRDKIFPFQDQNDEEPAAKLLAKIKKNLVSSLKPNREISKAGFRKVLIAEEADISSPKLDKVEGDKEDENQGDAEFGEEGATIGSARRAKAAARIKFICSAQPPGQEKTEGDQPRVETSSGTLKIRIPNLSKPNTGLRNEKADMFEPINSQVGAGRKRKSRSHSTMQENGVTSVLVHSNDDDPQVGMVQIDNHGHKTNGNQKGSIPSSSDSVKPIVSTREKRPKISEDLNFPAPSETDSDSESSKEFGPIWFCLVAAEEKKGSAPLPQLSSCYLRVKDGSVTVSCIKKYLVKKLGLASETEVEITLQGQPVLSSLQLNSLVDIWLKTVPKNEILTSFGSSAKDFIMVLSYGRKA* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1732 433 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vra8g1732 433 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 6 432 - -
Vra8g1732 433 SMART ring_2 19 59 IPR001841 -
Vra8g1732 433 Gene3D - 309 414 - -
Vra8g1732 433 MobiDBLite consensus disorder prediction 226 324 - -
Vra8g1732 433 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Vra8g1732 433 SUPERFAMILY RING/U-box 12 68 - -
Vra8g1732 433 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vra8g1732 433 MobiDBLite consensus disorder prediction 180 199 - -
Vra8g1732 433 MobiDBLite consensus disorder prediction 137 162 - -
Vra8g1732 433 MobiDBLite consensus disorder prediction 270 293 - -
Vra8g1732 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Vra8g1732 433 MobiDBLite consensus disorder prediction 244 258 - -
Vra8g1732 433 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 6 432 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1732 Vra-Chr8 34595488 34599272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1732 5 356 C3H Transcription Factor Family AT2G30580 28.689 3.56e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1732 K16277 - gmx:102669950 300.056