Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1730 ATGGCAACTATGCTGGCAAAGGACCATGCTCTCAACCTCAAGGAGACTGAGCTTTGCCTCGGTCTGCCTGGTGCTGGCGGTGGAGGCGGCGGTGGCGGTGGCTCTGAGGTGGAAACACCAAGGGCTACTGGGAAGAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTTAATCTGCAGGCCAAGGAAGATCTCAACGACAATCTGAAGAATGCCTCAGAGGAGAAGACCCTCCTTAAGGATCCTACCAAACAACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACATGATGACCCAGAAGGTTAGCACTGAGGATGGAGCTGAGAAGACAACAAGCAGCACTGCTTCTGGGGCATTTGTCAAAGTTTCCATGGACGGAGCTCCTTATCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAATTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGCGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTGCGAATAATGAAAGGATCGGAGGCAATTGGACTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 729 0.4952 MATMLAKDHALNLKETELCLGLPGAGGGGGGGGGSEVETPRATGKRGFSETVDLKLNLQAKEDLNDNLKNASEEKTLLKDPTKQPAKAQVVGWPPVRSYRKNMMTQKVSTEDGAEKTTSSTASGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNERKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1730 242 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 235 IPR003311 GO:0005634|GO:0006355
Vra8g1730 242 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 6 235 - -
Vra8g1730 242 Coils Coil 54 74 - -
Vra8g1730 242 Pfam AUX/IAA family 42 233 IPR033389 -
Vra8g1730 242 MobiDBLite consensus disorder prediction 25 46 - -
Vra8g1730 242 Gene3D - 118 236 - -
Vra8g1730 242 SUPERFAMILY CAD & PB1 domains 121 223 - -
Vra8g1730 242 ProSiteProfiles PB1 domain profile. 124 224 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1730 Vra-Chr8 34552549 34555055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1730 109 232 B3 DNA Binding Superfamily AT4G23980 33.065 2.78e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra8g1730 AUX_IAA 9.9e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1730 K14484 - gmx:100810762 410.609