Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1729 ATGGAAAGCAGTGTCACCTATGAGACCGATCTCAACCTCAAGGCAACTGAGCTTAGATTGGGCCTCCCAGGAACAGAAGAAACTGTTAGAATTACCAACAAAAGACCATTGACTGAAACTTCTGAGGAGACTGTTTCTAATGCTCAAAAAAATGTGGAAGCTGAGGCAGCCCCTCCAGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTTCATGAGAATGAGGGTGCTGGGATTTATGTGAAAGTAAGCATGGATGGAGCCCCTTACCTTAGGAAGATTGACCTCAAGGTATATGGAGGCTACACACAACTTCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTACAAGGGATCTGACTATGCACCAACTTATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGGCTGAGGATCATGAAAGGATCAGAGGCTCGGGGTTTGGGTTGTGGTGTATGA 549 0.4536 MESSVTYETDLNLKATELRLGLPGTEETVRITNKRPLTETSEETVSNAQKNVEAEAAPPAKAKIVGWPPIRSYRKNSLHENEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1729 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 179 IPR003311 GO:0005634|GO:0006355
Vra8g1729 182 Gene3D - 79 182 - -
Vra8g1729 182 Pfam AUX/IAA family 40 179 IPR033389 -
Vra8g1729 182 ProSiteProfiles PB1 domain profile. 85 172 IPR000270 GO:0005515
Vra8g1729 182 PANTHER AUXIN-INDUCED PROTEIN 10 179 - -
Vra8g1729 182 SUPERFAMILY CAD & PB1 domains 75 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1729 Vra-Chr8 34520427 34521837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1729 88 178 B3 DNA Binding Superfamily AT2G46530 37.363 2.92e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra8g1729 AUX_IAA 3.7e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1729 K14484 - gmx:100527777 313.923