Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1725 ATGGAACCGTCATTGCAACAGCAACCATCACCGCCACCGTCACCGCGCCCCCTCACCATCCTCGGGAAATACCAGCTGACGCGCCTTCTCGGCCGTGGCAGCTTCGCCAAGGTCTACCAGGCACGATCCCTAATTGACGGCGCCACCTTCGCCGTCAAAATTATTGACAAATCCAAAACCGTCGACGCCGGCATGGAGCCCCGCATAATCCGCGAGATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTTAAAATCCACGAGGTTATGGCCACGAAGACCAAAATCCACCTCATCGTGGAGCTTGCCGCCGGAGGCGAGCTCTTCGCTAGAATCTCCCGTCGCGGCCGTTTGCCGGAGTCCACAGCGCGCCGTTACTTCCAGCAGCTGGTCTCCGCGCTCCGGTTCTGCCACCGCAACGGTGTGGCGCACCGCGACCTCAAACCGCAGAACCTCCTCCTCGACGGCGAAGGAAACCTCAAAGTCTCCGACTTCGGCCTCTCCGCTCTGCCGGAGCATCTCAAGAATGGCCTTCTCCACACCGCATGCGGTACGCCAGCGTACACAGCGCCCGAGATCCTCCGCCAGAACGGCGGCTACGACGGGTCCAAGGCCGACGCCTGGTCCTGCGGCCTCATTCTCTACGTCTTCCTCGCCGGCTACCTTCCGTTCGACGACACGAACATTCCGGCGATGTACAAGAAGATATCCCGGAGAGATTACCAGTTCCCAGACTGGATATCAAAACCGGCACGCTATGTTATATATAAATTACTGGACCCGAACCCGGAAACAAGAATGGGTTTGGAGGCTCTGTTTGGGAACCCGTGGTTCAAGAAATCATTGAAACCGGAAACGGCGGAGGAAAGCGCGTTTGGGTGGGATAACGTTTATGTGAAGGGTTGTTACTACGAAGGGGTTAAGTGTTCGGGTGTGAACGCGTTTGATATAATATCGATGTCTTCGGGGTTGAATTTAACGAGGCTGTTCGAAACAACGTCGGATGGGGGTAGTAGGAGGGAGAAGAGATTCACTTCGAGTGCACGCGTGGAGGTGGTGGAGGAGAAGCTTAAGGAAGTGGGTGGGGTTTTGGGGTTTAAGGTTGAGGCTGGGAAAGCCACTAACGGTGCAATTGCGTTGTTGAAAGGAAAGGTGGCTTTGGTGTTCGAGGTCCTTCAGATTGTGCCCGATCAGCTTCTTCTGGTGGCCGTGAAGATCGTCGAGGGTGCTTTAGAGTTTGAGGAGCATCACTGGGTTGATTGGAAAAATGCCTTGCAAGATCTCGTCCTCTCTTGGCACAACGATGAATCATGA 1320 0.5576 MEPSLQQQPSPPPSPRPLTILGKYQLTRLLGRGSFAKVYQARSLIDGATFAVKIIDKSKTVDAGMEPRIIREIDAMRRLHHHPNILKIHEVMATKTKIHLIVELAAGGELFARISRRGRLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGEGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRQNGGYDGSKADAWSCGLILYVFLAGYLPFDDTNIPAMYKKISRRDYQFPDWISKPARYVIYKLLDPNPETRMGLEALFGNPWFKKSLKPETAEESAFGWDNVYVKGCYYEGVKCSGVNAFDIISMSSGLNLTRLFETTSDGGSRREKRFTSSARVEVVEEKLKEVGGVLGFKVEAGKATNGAIALLKGKVALVFEVLQIVPDQLLLVAVKIVEGALEFEEHHWVDWKNALQDLVLSWHNDES* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1725 439 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 437 - -
Vra8g1725 439 SMART serkin_6 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1725 439 ProSiteProfiles Protein kinase domain profile. 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1725 439 CDD CIPK_C 315 428 - -
Vra8g1725 439 Gene3D Transferase(Phosphotransferase) domain 1 17 305 - -
Vra8g1725 439 SUPERFAMILY Protein kinase-like (PK-like) 20 287 IPR011009 -
Vra8g1725 439 Pfam Protein kinase domain 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1725 439 Gene3D Kinase associated domain 1, KA1 310 432 - -
Vra8g1725 439 PANTHER SERINE/THREONINE KINASE 16 437 - -
Vra8g1725 439 Pfam NAF domain 314 371 IPR004041 GO:0007165
Vra8g1725 439 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Vra8g1725 439 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Vra8g1725 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1725 Vra-Chr8 34464493 34466124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1725 12 436 CBL-interacting serine-threonine protein kinases AT4G14580 59.629 5.50e-172 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra8g1725 Pkinase 6.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1725 K12761 - gmx:100811834 724.161